PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1000340.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 547aa    MW: 59661.3 Da    PI: 4.8103
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1000340.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.41.5e-1381785381374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv++L++cAeav++++l+la+al++++s la++++ +m+++a+yf+eALa+r++r        + p+++ +++ s+ l++   f+e++P+lk
  Pd.00g1000340.m01 178 LVHTLVACAEAVQQENLKLADALVKHVSLLAASQAGAMRKVATYFAEALARRIYR--------IYPQDSLDSSYSDILQM--HFYETCPYLK 259
                        689****************************************************........44555554445555444..5********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va+
  Pd.00g1000340.m01 260 FAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVAN 351
                        ******************************************************************************************** PP

               GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +l+dle+++L+++p   E++aVn+ ++lh ll++++++e+    vL+ +k ++Pk+v++veqea+hn++ Fl+rf eal+yys lfdsle +
  Pd.00g1000340.m01 352 SLADLEPSMLEIRPpdVETVAVNSCFELHPLLARPGAVEK----VLSSIKAMKPKIVTIVEQEANHNGPIFLDRFNEALHYYSNLFDSLEGS 439
                        **************999***********************....*********************************************999 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
                          +  +++ ++++++lgr+i+nvvaceg++r+erhetl +Wr r+++aGF  v+l+++a kqa++ll+ ++ +dgyrvee+sgsl+lgW++r
  Pd.00g1000340.m01 440 --SGPSQDLVMSEVYLGRQICNVVACEGQDRVERHETLTQWRGRMDSAGFDLVHLGSNAFKQASMLLALFAgGDGYRVEENSGSLMLGWHTR 529
                        ..566999************************************************************************************ PP

               GRAS 366 pLvsvSaWr 374
                        pL+++SaW+
  Pd.00g1000340.m01 530 PLIATSAWQ 538
                        ********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MDELLAVLGY KVRASDMAEV AEKLEQLEMV MGSAQEDGIS QLSDTVHYNP SDLSGWVQSM  60
LSEFNTVDGS PIDDPLFIAA GSSSITSIHF SNSHQLENPA SRVFHDDSEY DLRAIPGVAA  120
YPQTHLDSEA ESRRKRLKTS IGSNSIGANS GVGADSGSVS DPARPLVLVD SQETGVRLVH  180
TLVACAEAVQ QENLKLADAL VKHVSLLAAS QAGAMRKVAT YFAEALARRI YRIYPQDSLD  240
SSYSDILQMH FYETCPYLKF AHFTANQAIL EAFATASRVH VIDFGLKQGM QWPALMQALA  300
LRPGGPPAFR LTGIGPPQPD NTDALQQVGW KLAQLAETIG VEFEFRGFVA NSLADLEPSM  360
LEIRPPDVET VAVNSCFELH PLLARPGAVE KVLSSIKAMK PKIVTIVEQE ANHNGPIFLD  420
RFNEALHYYS NLFDSLEGSS GPSQDLVMSE VYLGRQICNV VACEGQDRVE RHETLTQWRG  480
RMDSAGFDLV HLGSNAFKQA SMLLALFAGG DGYRVEENSG SLMLGWHTRP LIATSAWQLA  540
SSTESTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein