PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g092780.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 314aa    MW: 34979.4 Da    PI: 9.224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g092780.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.3e-1716104185
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                       +Wt++e ++Li ++++++++l+r++l++ +We v++++          ++++qC++k+e+l+kry+++k++ +    +  st+ +f+ +
  Pd.00g092780.m01  16 CWTNDEAQTLISIYKDTWSALGRSNLRASDWETVAAALacrcPLVSPPKTAIQCRHKMEKLRKRYRNEKQRGSTYPGRFLSTWDLFRPM 104
                       8***********************************995433334458999*******************9998877888888888766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MAAPPQPKPR KFPPPCWTND EAQTLISIYK DTWSALGRSN LRASDWETVA AALACRCPLV  60
SPPKTAIQCR HKMEKLRKRY RNEKQRGSTY PGRFLSTWDL FRPMFDLECE APALFGSDPD  120
RETRAGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GAGVGGGFRV NAGVRGKGRE  180
NSSFSAGFDR YVSRGNDGAR GFPVKSSGDR NLGPSEFRSK SYGKTCNEKF SPKLNLKRDC  240
SYGAGTISGF YKKFRGGLDS DGFGKEVEDP IGQMASSVEF LGEVYGAEAT CYFALHSVNE  300
KDCIIGWMMC LNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-27Trihelix family protein