PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g090730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 342aa MW: 37856.8 Da PI: 7.4742 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Pd.00g090730.m01 92 FKTKLCCKFRA-GTCPYVTNCNFAHS 116 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.2e-06 | 165 | 190 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Pd.00g090730.m01 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP | |||||||
3 | zf-CCCH | 43.6 | 5e-14 | 222 | 247 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Pd.00g090730.m01 222 WKTRICNKWELTGYCPFGSKCHFAHG 247 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence |
MDYGRETNVV QVITGNSVGG DIWSADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ 60 SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL 120 RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS 240 KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY 300 HLGVPSQRSS IVNQRPGQRA HQKWKGPDKI SRIYGDWIDE IE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-128 | C3H family protein |