PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g088970.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 263aa    MW: 30880.8 Da    PI: 8.8476
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g088970.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.35e-241698186
          trihelix  1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                      +W  +e+++Li++r e+e r ++ +k+ k+lWe+vs+km+ergf+r+p+qCk+kw+nl  ryk  ++++ +    s ++cp+f++l+
  Pd.00g088970.m01 16 QWAPEETRELIAIRGELEIRNSNlAKRSKALWEAVSSKMAERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELQ 98
                      7*****************9988768999************************************9999997....4667******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGGGEGSKDG GGGSGQWAPE ETRELIAIRG ELEIRNSNLA KRSKALWEAV SSKMAERGFN  60
RTPEQCKCKW KNLLIRYKGK ETSDPESGRE CPFFEELQAV FTERANNMQR LLLESETGSA  120
RSKKMGKRKL RPGRSSDEFS EDPDEEDEDD KKRKGERVII PKATNAASGT SSSIQDMLKA  180
FFQQQQRMEM EWREMMERRA QEWRMFEQEW RQKMEKVERE RLMVEQAWRE REEQRRMREE  240
GRAERRDALL TTLLNKLINQ TNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130KKMGKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-29Trihelix family protein