PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g085700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 353aa MW: 39857.3 Da PI: 7.9508

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g085700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.7	1.2e-12	47	103	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Pd.00g085700.m01 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 103 57*****************99998898888888******************98 PP
2	AP2	51.3	3e-16	146	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pd.00g085700.m01 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MAKLSNQKAT AKNNIISNAN AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGPDTILNF PLSTYPKELK 120 EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT 180 QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNGPNN DISGQTNPNV EAILSNVTQN 240 PNDQERGLGF FNNLAYSPGE PIVTTQLPRP TTATSALGLL LQSSKFKEMM EMTTATDSIS 300 SQPELDTPQC TFPDDIQTYF DCQESSSYGE GDDLIFNELN SFMPPMFQCD FTT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MAKLSNQKAT AKNNIISNAN AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGPDTILNF PLSTYPKELK  120
EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNGPNN DISGQTNPNV EAILSNVTQN  240
PNDQERGLGF FNNLAYSPGE PIVTTQLPRP TTATSALGLL LQSSKFKEMM EMTTATDSIS  300
SQPELDTPQC TFPDDIQTYF DCQESSSYGE GDDLIFNELN SFMPPMFQCD FTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-96	AP2 family protein