PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g067970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 371aa MW: 41224.7 Da PI: 6.1517

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g067970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.2e-08	20	64	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Pd.00g067970.m01 20 QKRLCDYCGSSMALLYCRADSAKLCFSCDREVHSAnqlfskHTRS 64 7899****99*******************667888888875 PP
2	zf-B_box	29.4	1.7e-09	65	108	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ ++++fC++ ++ lC++C e+H + H+++pl Pd.00g067970.m01 65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRPL 108 57*****************************.5588888988775 PP
3	CCT	63	9.4e-22	327	369	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k Pd.00g067970.m01 327 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 369 99***************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK 60 HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL 120 LIVVGFENMD KKALLLSDES GGGGGGGDGF LGSGVDGSFD LDDGFSDLLV WDTPSVVSLD 180 DLINRNAACG RHKEEIFRQL RVLVKSEPNL FSENVDVKPL KSLASEQNMQ RGSLFTGFEH 240 DAEPTVFPAY EAHDFQYNDC GTAEKRESSP KTFIRSYLQE CCVVPDKHSY NDGSASHAND 300 GHGGQMNSEA SSAFPKVAAH ELSSQNRETA LSRYKEKKKT RRYEKHIRYE SRKVRAESRT 360 RIKGRFAKMD H

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK  60
HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL  120
LIVVGFENMD KKALLLSDES GGGGGGGDGF LGSGVDGSFD LDDGFSDLLV WDTPSVVSLD  180
DLINRNAACG RHKEEIFRQL RVLVKSEPNL FSENVDVKPL KSLASEQNMQ RGSLFTGFEH  240
DAEPTVFPAY EAHDFQYNDC GTAEKRESSP KTFIRSYLQE CCVVPDKHSY NDGSASHAND  300
GHGGQMNSEA SSAFPKVAAH ELSSQNRETA LSRYKEKKKT RRYEKHIRYE SRKVRAESRT  360
RIKGRFAKMD H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	8e-72	CO-like family protein