PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g065360.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1214aa MW: 137016 Da PI: 8.6072

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g065360.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.9	8.8e-25	1046	1120	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g065360.m02 1046 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1120 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1214 aa Download sequence
MGSLNEDGTT TSFESSPEMV KFLCDRLLDP TQPISERFRA LFSLRNLKGP GPRNALITAT 60 RDSSNLLAHE AAFALGQMQD ADAIPALVVV LNDLSLHPIV RHEPPKPWKV EYAKSSRSSC 120 KTCKSPIEKE KLRLGKMVTA TQFDGFMPMW NHADCIMKKA KQIKSSGIEV SPTSRATCKS 180 CSQKILKAEV RISTKPEGQG PRGLAWHHAN CFMELSPSTE VEKLSGWETL PVADQAAVRA 240 LVKKVPSNAR GGKKTEEQED KEFLQQSTPK TSTKRRKDSG GDQQSKVARL EGDVSTSWDV 300 SARDATDLES ILEAQTKELW ALKDDLKKHV TTAELREMLE ANVQDSTGSE LDLRERCADG 360 MMFGALSRCP ICSGFLRYSG GMYRCHGYIS EWSKCSYSTE EPERLKWKWK IPEDTDNQYL 420 NKWFKSQKVE KPVRILPPST PNKPSGSQAF NGQSQSSNSA NLADLKVAFR GLPQESMEEW 480 SRKIEGVAGL VHSKIKKDTN CLVVSGALDD KDAEMRKARR MKLPIVREDY LVDCFKKQKK 540 LPFDLYKVEV VGEASSMVTV KVKGRSAVHE SSGLQDTCHI LEDGKSIYNT TLSMSDLSTG 600 VNSYYILQII QDDKSSDCYV FRKWGRVGND KIGGNKLEEM SKSDAICEFK RLFLEKTGNS 660 WEAWEQKQHF QKQPGRFFPL DIDYGVNKQV SKKNQNNAAS KLAPPLAELM KMLFNVETYR 720 AAMMEFEINM SEMPLGKLSK SNIQKGFEAL TEIQNLLNSN GHAPSMKESL IVDASNRFFT 780 VIPSIHPRVI RDEDDFKSKV KMLEALQDIE IASRLVGFDA DTDDSLDEKY RKLRCDIDPI 840 PHDSEDFRLI KKYLLTTHAP THTDWSLELE EVFALEREGE FDKFAPYRKK LNNRMLLWHG 900 SRFTNFFGKG IYFADLVSKS AQYCYTDKKN PVGLMLLSEV ALGEVHELKK ATYMDKPPKG 960 KHSTKGLGKK IPQESEYVKW KDDVIVPCGK PVPSNIKASE LMYNEYIVYD KAQVKMQFLL 1020 KVRFHHKRKI PAGMPQGDKL QQFPGPARFA AIHKVFGASN VSKLLLHVPV HDRCEAVVTI 1080 AYEAQARIRD PVYGCVAHIF SLQQQVACLQ AQLMQVKAQL AHQSLVDSRN IESTQWPGNV 1140 NGVTNFPNYP SYMNPISPQS SLESIDHNCS DIAMNMQEIQ SSRDDFSYQA CSKRRPYNGD 1200 LGELQALALR MMRN

Sequence ? help Back to Top

Protein Sequence Length: 1214 aa Download sequence

MGSLNEDGTT TSFESSPEMV KFLCDRLLDP TQPISERFRA LFSLRNLKGP GPRNALITAT  60
RDSSNLLAHE AAFALGQMQD ADAIPALVVV LNDLSLHPIV RHEPPKPWKV EYAKSSRSSC  120
KTCKSPIEKE KLRLGKMVTA TQFDGFMPMW NHADCIMKKA KQIKSSGIEV SPTSRATCKS  180
CSQKILKAEV RISTKPEGQG PRGLAWHHAN CFMELSPSTE VEKLSGWETL PVADQAAVRA  240
LVKKVPSNAR GGKKTEEQED KEFLQQSTPK TSTKRRKDSG GDQQSKVARL EGDVSTSWDV  300
SARDATDLES ILEAQTKELW ALKDDLKKHV TTAELREMLE ANVQDSTGSE LDLRERCADG  360
MMFGALSRCP ICSGFLRYSG GMYRCHGYIS EWSKCSYSTE EPERLKWKWK IPEDTDNQYL  420
NKWFKSQKVE KPVRILPPST PNKPSGSQAF NGQSQSSNSA NLADLKVAFR GLPQESMEEW  480
SRKIEGVAGL VHSKIKKDTN CLVVSGALDD KDAEMRKARR MKLPIVREDY LVDCFKKQKK  540
LPFDLYKVEV VGEASSMVTV KVKGRSAVHE SSGLQDTCHI LEDGKSIYNT TLSMSDLSTG  600
VNSYYILQII QDDKSSDCYV FRKWGRVGND KIGGNKLEEM SKSDAICEFK RLFLEKTGNS  660
WEAWEQKQHF QKQPGRFFPL DIDYGVNKQV SKKNQNNAAS KLAPPLAELM KMLFNVETYR  720
AAMMEFEINM SEMPLGKLSK SNIQKGFEAL TEIQNLLNSN GHAPSMKESL IVDASNRFFT  780
VIPSIHPRVI RDEDDFKSKV KMLEALQDIE IASRLVGFDA DTDDSLDEKY RKLRCDIDPI  840
PHDSEDFRLI KKYLLTTHAP THTDWSLELE EVFALEREGE FDKFAPYRKK LNNRMLLWHG  900
SRFTNFFGKG IYFADLVSKS AQYCYTDKKN PVGLMLLSEV ALGEVHELKK ATYMDKPPKG  960
KHSTKGLGKK IPQESEYVKW KDDVIVPCGK PVPSNIKASE LMYNEYIVYD KAQVKMQFLL  1020
KVRFHHKRKI PAGMPQGDKL QQFPGPARFA AIHKVFGASN VSKLLLHVPV HDRCEAVVTI  1080
AYEAQARIRD PVYGCVAHIF SLQQQVACLQ AQLMQVKAQL AHQSLVDSRN IESTQWPGNV  1140
NGVTNFPNYP SYMNPISPQS SLESIDHNCS DIAMNMQEIQ SSRDDFSYQA CSKRRPYNGD  1200
LGELQALALR MMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	5e-38	LBD family protein