PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g062860.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 974aa MW: 107789 Da PI: 6.5102 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.2 | 1.4e-22 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Pd.00g062860.m01 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMAKDLHDSAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--R 214 99*****************************954.5444.48************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Pd.00g062860.m01 215 DEKSQLLLGIRRA 227 5677789999997 PP | |||||||
2 | Auxin_resp | 122.6 | 2.8e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F++++nPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ Pd.00g062860.m01 252 AAHAAANNSPFTIFFNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDTVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence |
MKAPTNGFLA TSGEGEQKRI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYEKEAML ASDMGLKQSR 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMAKD LHDSAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVMS 240 SDSMHIGILA AAAHAAANNS PFTIFFNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKSAPNSI FPGLSLMQWM 420 NMQQNNQFSA AQSGYFPSMV PPTGLQNNLS TDDPSKLLSF QAPVLSAPGV QLNKSAPQNQ 480 IPGQNSHQPV MFSQLQQQQL QTGNTQSQQT VHSSSKNSFQ FTTGSQDSQL QQQQLEPQPS 540 LLQRQQQSAQ LQQSSLQLLH QSVSQKQQLA HQQNQQLQQL PLSQHHQQPL SGNSFSADKL 600 LNNNFSAPSL MQSQHISSVQ PQSQHKPLTA IRSHSGLTEG DGPSCSTSPS TNNCQMSPSN 660 FLNRNQQGTA MLLGDSVAEP ASNLVQELQS KSDIRIKHEF PSSKGPDQIK YKGTITDQLE 720 ASSSGTSYCL DASTIQQNYA LPTFCLDSDV QSHPRNSLPF SANIEGLAPD TLLSRGYDSQ 780 KDLQNLLSNY GGTPRDIETE LSTAAISSQS FGAANLPFKP GCSSDVAINE AGVLSNGLWA 840 NQAQRMRTYT KVQKRGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP HRTDWKLVYV 900 DHENDILLVG DDPWEEFVGC VQSIKILSSV EVQQMSLDGD LGNVPVPNQA CSGSDSGNAW 960 RAPYDDNSAA SFNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |