PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g061170.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 982aa MW: 107676 Da PI: 9.3204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g061170.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.4e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g061170.m01 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89******.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 DTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGFGNTGV 300 MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR QSTTEVQFLT NMQREKISGE 360 TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI VRPNIPIIFC NICKGFCIYL 420 MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ AYIALQAWKA AIFSDPFNFT 480 SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAS YLPPELGLLS DLALFHLNSN 540 RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL KYLDLRFNXX XXMKLLHELD 600 LSNNRFVGDF PKVVFSLPSL KYLDLRFNEF EGSVPSQLFD KDLDALFLND NRFQFGIPPN 660 LGNSPVSVXX XXGVIPASIC QLPRLHNFTY SFNYFTGEAP ACAANKNNIN GRKNCIRGKL 720 DQRSARECAS PAARPVDCRK LQCSSTTSPG GGGGSGGGSK RRPPPPSAPV GNKQPAQRRP 780 PRVSTPPPPT SESSPSTRSH PPPPSNPPSS SSSSPPLVPN RAPPPSNSNS HSHSPTKPPP 840 PTQRVSPRTH LPPSSPPSRS HHHWTLTPPP PPTQNVSPTT HLRPPPPPLP THYNSSSSPP 900 PPPVLYHASP PDHSKHDLVS PSPPNQYSIQ KHHLLPPHMS IIHQKLHHHP QVQVEVPHMI 960 RHQPPHQVSH LIPYLHCRPP VV

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence

MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
DTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGFGNTGV  300
MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR QSTTEVQFLT NMQREKISGE  360
TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI VRPNIPIIFC NICKGFCIYL  420
MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ AYIALQAWKA AIFSDPFNFT  480
SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAS YLPPELGLLS DLALFHLNSN  540
RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL KYLDLRFNXX XXMKLLHELD  600
LSNNRFVGDF PKVVFSLPSL KYLDLRFNEF EGSVPSQLFD KDLDALFLND NRFQFGIPPN  660
LGNSPVSVXX XXGVIPASIC QLPRLHNFTY SFNYFTGEAP ACAANKNNIN GRKNCIRGKL  720
DQRSARECAS PAARPVDCRK LQCSSTTSPG GGGGSGGGSK RRPPPPSAPV GNKQPAQRRP  780
PRVSTPPPPT SESSPSTRSH PPPPSNPPSS SSSSPPLVPN RAPPPSNSNS HSHSPTKPPP  840
PTQRVSPRTH LPPSSPPSRS HHHWTLTPPP PPTQNVSPTT HLRPPPPPLP THYNSSSSPP  900
PPPVLYHASP PDHSKHDLVS PSPPNQYSIQ KHHLLPPHMS IIHQKLHHHP QVQVEVPHMI  960
RHQPPHQVSH LIPYLHCRPP VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	1e-54	C3H family protein