PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g054560.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 298aa MW: 32998.8 Da PI: 5.1607

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g054560.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.3e-30	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA++ra dP yG+v+ il+lq+q+ + +a Pd.00g054560.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHVRAVDPTYGCVSYILDLQEQVLNIQA 100 7*******************9998469************************************************************ PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g054560.m01 101 QLDEAHEQL 109 **99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHVRAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN 120 QDLENSNEQS EVANPTERAA VAKPTEFEMK LTIYMYTCPG NCTYMDTVGV ICEDTEGQIA 180 SGASSGDIAL KSHHQPRDGP FELNDIFAII NVVPAIALLS YGFFNKGLFP GLCFGAGLGI 240 TTFGMAYMFV HDGLVHRKLV EYDEPMKLMN NEGSLFGQLV KEYWSRSANA RVGDLDIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	1e-40	LBD family protein