PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g050330.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 127aa MW: 13854.3 Da PI: 8.422 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.4e-08 | 32 | 49 | 7 | 24 |
SGGGGTS--TTTTT-SS- CS zf-CCCH 7 rffartGtCkyGdrCkFa 24 ++++r GtCk+G++CkF+ Pd.00g050330.m01 32 QYYMRRGTCKFGASCKFH 49 59***************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MLGLNLGWFF SSLPPRSSNP LALGCAVILC WQYYMRRGTC KFGASCKFHC LKQGGSSGCP 60 ANLIINGIVV VTIKVAAMWL DPSKHLGKEI TSLHNCICRL YGSSVCGEGG EYETLTLNCL 120 LFVNHNH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 2e-07 | C3H family protein |