PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g049180.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 188aa MW: 20866.1 Da PI: 5.2901 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 165.9 | 5.1e-52 | 2 | 96 | 8 | 102 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 ++ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prde Pd.00g049180.m01 2 QDIEQASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDE 94 579*****************************************************************************************9 PP NF-YC 101 lk 102 lk Pd.00g049180.m01 95 LK 96 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MQDIEQASDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FAKACEIFIL ELTLRSWIHT 60 EENKRRTLQK NDIAAAISRT DVFDFLVDII PRDELKEEGL GVTKATIPVV GSPADIPYYY 120 VPQQHPVGAP GMIMGKPVDQ AAIYAAQQPR PPMAFMPWHS SRSPKLLEMS FNTVGLVGDC 180 DAVDCAVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 8e-77 | NF-YC family protein |