PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g041890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1116aa MW: 125690 Da PI: 8.7629

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g041890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	7.9e-25	948	1022	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g041890.m01 948 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1022 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGTPDTITT VTTTSKVSSG IEVSPTSRAT 120 CKSCSQKILK AEVRISTKPE GQGPRGLAWH HASCFMELSP STEVEKLSGW ETLPVADQAA 180 VRALVKKVTS NARGKKTKEQ EDKEFLQQST SNTSTKRRKD SGGDQKSKVA RSEGDVSTSW 240 DVSVRDATDL ESKLEAQTKE LADGMMFGAL SRCPICSGFL RYSGGMYQCH GYISEWSKCS 300 YSTEEPERLK WKWKIPEDAD NQYLNKWFKS QKVEKPVRIL PPSTSNKPSG SQASNGQSQS 360 SNSANLADLK VAFRGLPQES MEEWNRKIEG VAGLVHPKIK KATNCLVVSG ALDDKDAEMR 420 KARRIKLPIV REDYLVDCFK KQKKLPFDLY KVEVVGEASS MVTVKVKGRS AVHESSGLQD 480 TCHILEDGKS IYNTTLSMSD LSTGVNSYYI LQIIQDDKSS DCYVFRKWGR VGNDKIGGNK 540 LEEMSKSDAI CEFKRLFLEK TGNSWEAWEQ KQNFQKQPGR FFPLDIDYGV NKQVSKKNQN 600 SAASKLAPPL AELMKMLFNV ETYRAAMMEF EINMSEMPLG KLSKSNIQKG FEALTEIQNL 660 LNSNGHAPSM KESLIVDASN RFFTVIPSIH PHVIRDEDDF KSKVKMLEAL QDIEIASRLV 720 GFDADSDDSL DEKYRKLRCD IDPIPHDSED FQLIKKYLLT THAPTHTDWS LELEEVFALE 780 REGEFDKFSP YRKKLNNRML LWHGSRFTNF VGILSQGLRI APPEAPATDK TNPVGLMLLS 840 EVALGEVYEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC GKPVPSNIKA 900 SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR FAAIHKVFGA 960 SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC LQAQLMQVKA 1020 QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN CSDIAMNMEE 1080 IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGTPDTITT VTTTSKVSSG IEVSPTSRAT  120
CKSCSQKILK AEVRISTKPE GQGPRGLAWH HASCFMELSP STEVEKLSGW ETLPVADQAA  180
VRALVKKVTS NARGKKTKEQ EDKEFLQQST SNTSTKRRKD SGGDQKSKVA RSEGDVSTSW  240
DVSVRDATDL ESKLEAQTKE LADGMMFGAL SRCPICSGFL RYSGGMYQCH GYISEWSKCS  300
YSTEEPERLK WKWKIPEDAD NQYLNKWFKS QKVEKPVRIL PPSTSNKPSG SQASNGQSQS  360
SNSANLADLK VAFRGLPQES MEEWNRKIEG VAGLVHPKIK KATNCLVVSG ALDDKDAEMR  420
KARRIKLPIV REDYLVDCFK KQKKLPFDLY KVEVVGEASS MVTVKVKGRS AVHESSGLQD  480
TCHILEDGKS IYNTTLSMSD LSTGVNSYYI LQIIQDDKSS DCYVFRKWGR VGNDKIGGNK  540
LEEMSKSDAI CEFKRLFLEK TGNSWEAWEQ KQNFQKQPGR FFPLDIDYGV NKQVSKKNQN  600
SAASKLAPPL AELMKMLFNV ETYRAAMMEF EINMSEMPLG KLSKSNIQKG FEALTEIQNL  660
LNSNGHAPSM KESLIVDASN RFFTVIPSIH PHVIRDEDDF KSKVKMLEAL QDIEIASRLV  720
GFDADSDDSL DEKYRKLRCD IDPIPHDSED FQLIKKYLLT THAPTHTDWS LELEEVFALE  780
REGEFDKFSP YRKKLNNRML LWHGSRFTNF VGILSQGLRI APPEAPATDK TNPVGLMLLS  840
EVALGEVYEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC GKPVPSNIKA  900
SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR FAAIHKVFGA  960
SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC LQAQLMQVKA  1020
QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN CSDIAMNMEE  1080
IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	7e-38	LBD family protein