PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g038070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 392aa MW: 43958.1 Da PI: 8.7979

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g038070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.5	2.3e-30	16	65	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s Pd.00g038070.m01 16 RIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 65 8***********************************************96 PP
2	K-box	95.7	7.4e-32	90	179	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++++ +l+q+ +lq+ke++l+e+nk+L+++l Pd.00g038070.m01 90 AREALELSSQQEYLKLKARYEALQRNQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQCMLDQLTDLQRKEHMLNEANKTLKQRL 179 555666789******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MVRWIADVVG FIFRHRIENK INRQVTFAKR RNGLLKKAYE LSVLCEAEVA LIIFSNRGKL 60 YEFCSSSSML KTLERYQKCN YGAPETNVSA REALELSSQQ EYLKLKARYE ALQRNQRNLL 120 GEDLGPLSSK ELESLERQLD MSLKQIRSTR TQCMLDQLTD LQRKEHMLNE ANKTLKQRLF 180 EGYHVNSLQM NPNADEYGRQ QAQAHGDGFF HPLDCEPTLQ IGYQNDPISV VTAGPSYPNF 240 LGRKKDDAKA RPAIEGFLRA IGSGSQPPPI SSHADSVLRS LTGGALVAVF IEAAASRGDA 300 YFAGGVRLTD AGDFDGSDAL WIGDFLHWFH IDALGSRIGY GLLRGWHRFQ PLCFGKVDSL 360 LRVGSVITAK GDSCMEVIVK KRRVVQESGN VH

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MVRWIADVVG FIFRHRIENK INRQVTFAKR RNGLLKKAYE LSVLCEAEVA LIIFSNRGKL  60
YEFCSSSSML KTLERYQKCN YGAPETNVSA REALELSSQQ EYLKLKARYE ALQRNQRNLL  120
GEDLGPLSSK ELESLERQLD MSLKQIRSTR TQCMLDQLTD LQRKEHMLNE ANKTLKQRLF  180
EGYHVNSLQM NPNADEYGRQ QAQAHGDGFF HPLDCEPTLQ IGYQNDPISV VTAGPSYPNF  240
LGRKKDDAKA RPAIEGFLRA IGSGSQPPPI SSHADSVLRS LTGGALVAVF IEAAASRGDA  300
YFAGGVRLTD AGDFDGSDAL WIGDFLHWFH IDALGSRIGY GLLRGWHRFQ PLCFGKVDSL  360
LRVGSVITAK GDSCMEVIVK KRRVVQESGN VH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-113	MIKC_MADS family protein