PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g029240.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 1169aa MW: 129277 Da PI: 4.8371

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g029240.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.6	6.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s Pd.00g029240.m02 9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKMHEYIS 59 569**********************************************86 PP
2	K-box	74.1	3.9e-25	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++ g++l++++++ ++ l kLk+ +++L+re+R++lG dL+ L++ ++++Le+++ +sl+ iR++K+++l++q+e+ +kk k+l+e+ + Pd.00g029240.m02 71 YQHTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTYDQMHSLEDKMASSLEAIRERKYHVLKTQTETYKKKVKNLEERRGN 163 67888999********************************************************************************98866 PP K-box 94 L 94 + Pd.00g029240.m02 164 M 164 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP 60 TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ 120 MHSLEDKMAS SLEAIRERKY HVLKTQTETY KKKVKNLEER RGNMLHSYEV ASEDPQYGYV 180 DNEGDYESAV ALANGAFGTF RSPELGRLSD SVSATFSPPL SEINSSRGLK IHGDLSNFEN 240 EELRIQFQVQ FSKRYQRDQS HMEAAASAPP WIPEDDLRLR KAMEAGASLE ALAKGAVRFS 300 RMFSVRELQE RWSSLLYDAD ISAEASSRML EVEGCNSSAA FKSSRVGSSR DSKRKGESIR 360 KHYYAMQKRL RTSNSVDPNS YHKNIFDPNF LFAPHLDNGE ALEENFGVGD HNQPLFMDCN 420 GNESNAADAF RAGECVSIGN HGVEGVVREA CPNGFVEPVS LLPNGLGEDT FFHDPACEDL 480 PTQGDDLIDF ANALDVEDIG PSHASTDEPL WKTIEDVPAP EMPIDVSLGV NGEDAEKTLV 540 VPDDADGENI GSSQYEVVHS EAMLNDREVC DELNRSVTIS GGDYAEIYLT NEDELTFMDV 600 NGKESMDKSS YESLKPIPLN SPKDVHEYVV PDPCQPQKLI SDSFQDVSHN VHTAKMPDSC 660 QPQNLISETC QAVSHNVHAA EMDVAAKPSH SLHDEQRDIS SAEANNPSST SVPNPLTPEL 720 REKEMICTLN TEDPEIPCND DIFPPTGTVH AVVQPTLKEA SGLASSTGKR KCDQQTITLT 780 KEEDSAQPFK VLRMVGHDTI TENSPNHALV SFGIKAAYGD SNSLASVSKH DKNVPADPSQ 840 CRSAHQPPKS ITNRMLKEEG IVAPSTVAEL APVITEPGST KMTFLEPEAN PSALDCEESE 900 EESDDDVDDD DADIPYFSDI EQMILEMDLC PDDQDSYFSK IASAYQDEDS KRHIMRLEQC 960 ARSSMQRDLA SKGALAVLYG RHVKEYIKKT ERLLRRRPPR SRSPAIAAEA DASGASGMCI 1020 TTSSTNTTSS TKSDRRGKMR RFELLGGAAI AAAAAALVLL GNVVVAEAST SPSAFVQNVI 1080 YSNKIAIFSK SYCPYCLRAK RIFSELHEQP FVVELDLRDD GAQIQSVLLD IVGRTTVPQI 1140 FVNGKHIGGS DDLKAAVLSG QLQKLLSIS

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence

MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ  120
MHSLEDKMAS SLEAIRERKY HVLKTQTETY KKKVKNLEER RGNMLHSYEV ASEDPQYGYV  180
DNEGDYESAV ALANGAFGTF RSPELGRLSD SVSATFSPPL SEINSSRGLK IHGDLSNFEN  240
EELRIQFQVQ FSKRYQRDQS HMEAAASAPP WIPEDDLRLR KAMEAGASLE ALAKGAVRFS  300
RMFSVRELQE RWSSLLYDAD ISAEASSRML EVEGCNSSAA FKSSRVGSSR DSKRKGESIR  360
KHYYAMQKRL RTSNSVDPNS YHKNIFDPNF LFAPHLDNGE ALEENFGVGD HNQPLFMDCN  420
GNESNAADAF RAGECVSIGN HGVEGVVREA CPNGFVEPVS LLPNGLGEDT FFHDPACEDL  480
PTQGDDLIDF ANALDVEDIG PSHASTDEPL WKTIEDVPAP EMPIDVSLGV NGEDAEKTLV  540
VPDDADGENI GSSQYEVVHS EAMLNDREVC DELNRSVTIS GGDYAEIYLT NEDELTFMDV  600
NGKESMDKSS YESLKPIPLN SPKDVHEYVV PDPCQPQKLI SDSFQDVSHN VHTAKMPDSC  660
QPQNLISETC QAVSHNVHAA EMDVAAKPSH SLHDEQRDIS SAEANNPSST SVPNPLTPEL  720
REKEMICTLN TEDPEIPCND DIFPPTGTVH AVVQPTLKEA SGLASSTGKR KCDQQTITLT  780
KEEDSAQPFK VLRMVGHDTI TENSPNHALV SFGIKAAYGD SNSLASVSKH DKNVPADPSQ  840
CRSAHQPPKS ITNRMLKEEG IVAPSTVAEL APVITEPGST KMTFLEPEAN PSALDCEESE  900
EESDDDVDDD DADIPYFSDI EQMILEMDLC PDDQDSYFSK IASAYQDEDS KRHIMRLEQC  960
ARSSMQRDLA SKGALAVLYG RHVKEYIKKT ERLLRRRPPR SRSPAIAAEA DASGASGMCI  1020
TTSSTNTTSS TKSDRRGKMR RFELLGGAAI AAAAAALVLL GNVVVAEAST SPSAFVQNVI  1080
YSNKIAIFSK SYCPYCLRAK RIFSELHEQP FVVELDLRDD GAQIQSVLLD IVGRTTVPQI  1140
FVNGKHIGGS DDLKAAVLSG QLQKLLSIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	4e-64	MIKC_MADS family protein