PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g029240.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 1172aa MW: 129668 Da PI: 4.819

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g029240.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.6	6.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s Pd.00g029240.m01 9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKMHEYIS 59 569**********************************************86 PP
2	K-box	75.8	1.1e-25	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++ g++l++++++ ++ l kLk+ +++L+re+R++lG dL+ L++ ++++Le+++ +sl+ iR++K+++l++q+e+ +kk k+l+e+ + Pd.00g029240.m01 71 YQHTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTYDQMHSLEDKMASSLEAIRERKYHVLKTQTETYKKKVKNLEERRGN 163 67888999********************************************************************************98765 PP K-box 94 L 94 + Pd.00g029240.m01 164 M 164 4 PP

Sequence ? help Back to Top
Protein Sequence Length: 1172 aa Download sequence
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP 60 TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ 120 MHSLEDKMAS SLEAIRERKY HVLKTQTETY KKKVKNLEER RGNMLHSYFD QEVASEDPQY 180 GYVDNEGDYE SAVALANGAF GTFRSPELGR LSDSVSATFS PPLSEINSSR GLKIHGDLSN 240 FENEELRIQF QVQFSKRYQR DQSHMEAAAS APPWIPEDDL RLRKAMEAGA SLEALAKGAV 300 RFSRMFSVRE LQERWSSLLY DADISAEASS RMLEVEGCNS SAAFKSSRVG SSRDSKRKGE 360 SIRKHYYAMQ KRLRTSNSVD PNSYHKNIFD PNFLFAPHLD NGEALEENFG VGDHNQPLFM 420 DCNGNESNAA DAFRAGECVS IGNHGVEGVV REACPNGFVE PVSLLPNGLG EDTFFHDPAC 480 EDLPTQGDDL IDFANALDVE DIGPSHASTD EPLWKTIEDV PAPEMPIDVS LGVNGEDAEK 540 TLVVPDDADG ENIGSSQYEV VHSEAMLNDR EVCDELNRSV TISGGDYAEI YLTNEDELTF 600 MDVNGKESMD KSSYESLKPI PLNSPKDVHE YVVPDPCQPQ KLISDSFQDV SHNVHTAKMP 660 DSCQPQNLIS ETCQAVSHNV HAAEMDVAAK PSHSLHDEQR DISSAEANNP SSTSVPNPLT 720 PELREKEMIC TLNTEDPEIP CNDDIFPPTG TVHAVVQPTL KEASGLASST GKRKCDQQTI 780 TLTKEEDSAQ PFKVLRMVGH DTITENSPNH ALVSFGIKAA YGDSNSLASV SKHDKNVPAD 840 PSQCRSAHQP PKSITNRMLK EEGIVAPSTV AELAPVITEP GSTKMTFLEP EANPSALDCE 900 ESEEESDDDV DDDDADIPYF SDIEQMILEM DLCPDDQDSY FSKIASAYQD EDSKRHIMRL 960 EQCARSSMQR DLASKGALAV LYGRHVKEYI KKTERLLRRR PPRSRSPAIA AEADASGASG 1020 MCITTSSTNT TSSTKSDRRG KMRRFELLGG AAIAAAAAAL VLLGNVVVAE ASTSPSAFVQ 1080 NVIYSNKIAI FSKSYCPYCL RAKRIFSELH EQPFVVELDL RDDGAQIQSV LLDIVGRTTV 1140 PQIFVNGKHI GGSDDLKAAV LSGQLQKLLS IS

Sequence ? help Back to Top

Protein Sequence Length: 1172 aa Download sequence

MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ  120
MHSLEDKMAS SLEAIRERKY HVLKTQTETY KKKVKNLEER RGNMLHSYFD QEVASEDPQY  180
GYVDNEGDYE SAVALANGAF GTFRSPELGR LSDSVSATFS PPLSEINSSR GLKIHGDLSN  240
FENEELRIQF QVQFSKRYQR DQSHMEAAAS APPWIPEDDL RLRKAMEAGA SLEALAKGAV  300
RFSRMFSVRE LQERWSSLLY DADISAEASS RMLEVEGCNS SAAFKSSRVG SSRDSKRKGE  360
SIRKHYYAMQ KRLRTSNSVD PNSYHKNIFD PNFLFAPHLD NGEALEENFG VGDHNQPLFM  420
DCNGNESNAA DAFRAGECVS IGNHGVEGVV REACPNGFVE PVSLLPNGLG EDTFFHDPAC  480
EDLPTQGDDL IDFANALDVE DIGPSHASTD EPLWKTIEDV PAPEMPIDVS LGVNGEDAEK  540
TLVVPDDADG ENIGSSQYEV VHSEAMLNDR EVCDELNRSV TISGGDYAEI YLTNEDELTF  600
MDVNGKESMD KSSYESLKPI PLNSPKDVHE YVVPDPCQPQ KLISDSFQDV SHNVHTAKMP  660
DSCQPQNLIS ETCQAVSHNV HAAEMDVAAK PSHSLHDEQR DISSAEANNP SSTSVPNPLT  720
PELREKEMIC TLNTEDPEIP CNDDIFPPTG TVHAVVQPTL KEASGLASST GKRKCDQQTI  780
TLTKEEDSAQ PFKVLRMVGH DTITENSPNH ALVSFGIKAA YGDSNSLASV SKHDKNVPAD  840
PSQCRSAHQP PKSITNRMLK EEGIVAPSTV AELAPVITEP GSTKMTFLEP EANPSALDCE  900
ESEEESDDDV DDDDADIPYF SDIEQMILEM DLCPDDQDSY FSKIASAYQD EDSKRHIMRL  960
EQCARSSMQR DLASKGALAV LYGRHVKEYI KKTERLLRRR PPRSRSPAIA AEADASGASG  1020
MCITTSSTNT TSSTKSDRRG KMRRFELLGG AAIAAAAAAL VLLGNVVVAE ASTSPSAFVQ  1080
NVIYSNKIAI FSKSYCPYCL RAKRIFSELH EQPFVVELDL RDDGAQIQSV LLDIVGRTTV  1140
PQIFVNGKHI GGSDDLKAAV LSGQLQKLLS IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-62	MIKC_MADS family protein