PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g027880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 650aa MW: 71734.4 Da PI: 6.723

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g027880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.3e-23	117	218	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + Pd.00g027880.m01 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--R 205 89**************************996555555..89*******************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Pd.00g027880.m01 206 AENGDLCVGIRRA 218 488999**997 PP
2	Auxin_resp	114.4	1e-37	239	322	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ Pd.00g027880.m01 239 AAALASKGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 322 67889*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MDSKEKLKEG EKCLDPQLWH ACAGGMVQMP PVNAKVFYFP QGHAEHACGP VDFRNCPRVP 60 PYIFCRVSGI KFMADPETDE VYAKIRLVPL SASEAGYEDD GIGGLNGSET PDKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSS GWNPTVFEAA 240 ALASKGQPFE VVYYPRASTP EFCVKASLVK AALQIRWCPG MRFKMAFETE DSSRISWFMG 300 TISSVQVAEP LRWPESPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPA IHLTPFSPPR 360 KKMRLPQHPD FPFEGQLPMP TFSGNLLGPS SPFGCLPDKT PAGMQGARHG HYGLSLSDMH 420 LNKLQTGLFP AGFTPLDHAA TATKFSNNTM TQKPTMSENV SCLLTMAHST QTSKKPDDVK 480 PPQLVLFGQP ILTEQQISLS CSGDTVSPVL TGNSSSDGNA EKTANLSDNS VSALHQQSLQ 540 ERSYCDGFQW YKDTRHETEP SLETGHCKVF MESEDVGRTL DLSVFGSYDE LYRKLADMFG 600 IENSETLNHV LYRDATGAVK HIGDEPLSDF MKTARRLTIL MDSGSNNVGM

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MDSKEKLKEG EKCLDPQLWH ACAGGMVQMP PVNAKVFYFP QGHAEHACGP VDFRNCPRVP  60
PYIFCRVSGI KFMADPETDE VYAKIRLVPL SASEAGYEDD GIGGLNGSET PDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSS GWNPTVFEAA  240
ALASKGQPFE VVYYPRASTP EFCVKASLVK AALQIRWCPG MRFKMAFETE DSSRISWFMG  300
TISSVQVAEP LRWPESPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPA IHLTPFSPPR  360
KKMRLPQHPD FPFEGQLPMP TFSGNLLGPS SPFGCLPDKT PAGMQGARHG HYGLSLSDMH  420
LNKLQTGLFP AGFTPLDHAA TATKFSNNTM TQKPTMSENV SCLLTMAHST QTSKKPDDVK  480
PPQLVLFGQP ILTEQQISLS CSGDTVSPVL TGNSSSDGNA EKTANLSDNS VSALHQQSLQ  540
ERSYCDGFQW YKDTRHETEP SLETGHCKVF MESEDVGRTL DLSVFGSYDE LYRKLADMFG  600
IENSETLNHV LYRDATGAVK HIGDEPLSDF MKTARRLTIL MDSGSNNVGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein