PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g025780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 821aa MW: 91848.1 Da PI: 6.1163

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g025780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.9	3.9e-23	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Pd.00g025780.m01 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 221 99***************************9777666.49********************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Pd.00g025780.m01 222 EKNQLLLGIRRA 233 99999**997 PP
2	Auxin_resp	106	4.3e-35	242	318	8	83
Auxin_resp 8 ksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +sv +++YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Pd.00g025780.m01 242 SSVLSIFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 318 67889*******************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MKLSTSGLGQ QDHEAAGGGA EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA 60 TTNKQVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME 120 LGIPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM 240 PSSVLSIFYN PRASPSEFVI PLSKYIKAVF HTRVSVGMRF RMLFETEESS VRRYMGTITG 300 ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSL FPLRLKRPWH 360 PGASSMQDNR DDANSLMWLR GGTGEQGLHS MNFQPVGMFP WMQQRLDSTL IGNDHNPQYQ 420 AMLAAGLQNL GSGDQLRQHM MHFQQPFQYV QQSSSHNPML QLQQQIQQSI PHNILQAQPQ 480 VSLENLPQHL LQQQFNNQTE EQVQQQQNTY HDALKVQTEQ LQQSQQMNVS SPSFPKTDFS 540 DSNTKFSAST TPRQNMLGTL CPEGSGNLLS SSRAGHSMPT EQLPQQSWAP KYAHAQVNAF 600 ANSMSFPPFN EKDNAVEQEN CNSDSQNPTL FGVNIESSGL LFPTTAPSFA TSSNDADMSM 660 PLGDSGFQSS LYGCMQDSSE LLHSAGQVDP PTPNCTFVKV YKSGSVGRSL DISRFSSYHE 720 LREELGQMFG IEGKLEDRLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDV 780 HKMGDQAVEP FSPNTGQRLN SGGGEAQDIV SGLPSLGSLE Y

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MKLSTSGLGQ QDHEAAGGGA EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA  60
TTNKQVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME  120
LGIPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM  240
PSSVLSIFYN PRASPSEFVI PLSKYIKAVF HTRVSVGMRF RMLFETEESS VRRYMGTITG  300
ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSL FPLRLKRPWH  360
PGASSMQDNR DDANSLMWLR GGTGEQGLHS MNFQPVGMFP WMQQRLDSTL IGNDHNPQYQ  420
AMLAAGLQNL GSGDQLRQHM MHFQQPFQYV QQSSSHNPML QLQQQIQQSI PHNILQAQPQ  480
VSLENLPQHL LQQQFNNQTE EQVQQQQNTY HDALKVQTEQ LQQSQQMNVS SPSFPKTDFS  540
DSNTKFSAST TPRQNMLGTL CPEGSGNLLS SSRAGHSMPT EQLPQQSWAP KYAHAQVNAF  600
ANSMSFPPFN EKDNAVEQEN CNSDSQNPTL FGVNIESSGL LFPTTAPSFA TSSNDADMSM  660
PLGDSGFQSS LYGCMQDSSE LLHSAGQVDP PTPNCTFVKV YKSGSVGRSL DISRFSSYHE  720
LREELGQMFG IEGKLEDRLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDV  780
HKMGDQAVEP FSPNTGQRLN SGGGEAQDIV SGLPSLGSLE Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein