PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g016050.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 236aa    MW: 25668.6 Da    PI: 10.4146
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g016050.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly200.42.4e-62551902137
            Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                       ++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk+l
  Pd.00g016050.m01  55 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRKSL 147
                       9******************************************************************************************** PP

            Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                       +++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++
  Pd.00g016050.m01 148 SIKCHADGSGYLVSLTVMNNLLKTKENFIVPVTAAEFAVMKTA 190
                       *****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MMKVLRLLSS SRNQFPTRGA LSMHAYTHST SFSTASKSFS VKGTSAHNVF ASFNIFKGKA  60
ALSLNPVLPT FTKLESGNLV VSRRGVVMLK FTPAIGERKY DWEKNQVFAL SATEVGSLIS  120
LGPKDSCELF HDPSMKSSNA GQVRKSLSIK CHADGSGYLV SLTVMNNLLK TKENFIVPVT  180
AAEFAVMKTA CSFALPHIMG WDRLMSNMPS GVGGQQSNVG GQQSKVVPQL LDEWDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-86Whirly family protein