PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g007070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 636aa MW: 70278.4 Da PI: 7.1238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g007070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	441	467	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g007070.m01 441 PGEPDCPYFINTQRCKFGMRCKFNHPK 467 5789*********************96 PP
2	zf-CCCH	35.8	1.4e-11	490	514	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Pd.00g007070.m01 490 EPPCAFYLKMGQCKFGATCKFHHPK 514 79*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MAATDPTFNI HYSSQVLHDQ PAKLMTSIKK LAESPGITFI PPTYTYTNNP HDDLAALIDT 60 ESSIPTVDFS LLTSGTPQQR SQAIHDLGKA CQDWGFFLVI NHGVPESLMK AILDGSQGFF 120 DLTEEEKHEF EGKHVLDPIR CGTSFNASVE KVMFWRDFLK VFVYPEFHFP TKPAGFSELA 180 LEYCKRTRQV TRELLKGISE SLGLEAGNLE KFLNVESGLQ IFIANLYPPC PQPELALGMP 240 PHSDHGLLTL LIQNGINGLQ VQHKGKWVNV NAMPNSFLVN TGDHLEIFSN GKYRSNIHPA 300 VLTNKATRIS LATPTGPSLE TVVTPAPELI NNENRKPAYI GMKYKDYLEL QQSSLLDGKS 360 ILDRFLGQLL HLHITLGFTS PNNQCRAISK DTAPAQSAAA DAAATAGLSS LYFTCPNRLL 420 PIRPDPTVPL VAPSEFLSER PGEPDCPYFI NTQRCKFGMR CKFNHPKDKL AAAVASENSD 480 VFALPERPSE PPCAFYLKMG QCKFGATCKF HHPKDIQIPS AEQENKIGEI GTTIQLEGTG 540 FAVKPPALSF NSKELPVRLG EPDCPFYLKT GSCKKFIQNL QKPGKDGKST SPYLKELKKL 600 IVSWRTWIKS SISSTCCTSE DLLVHLQSLR NADEGS

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MAATDPTFNI HYSSQVLHDQ PAKLMTSIKK LAESPGITFI PPTYTYTNNP HDDLAALIDT  60
ESSIPTVDFS LLTSGTPQQR SQAIHDLGKA CQDWGFFLVI NHGVPESLMK AILDGSQGFF  120
DLTEEEKHEF EGKHVLDPIR CGTSFNASVE KVMFWRDFLK VFVYPEFHFP TKPAGFSELA  180
LEYCKRTRQV TRELLKGISE SLGLEAGNLE KFLNVESGLQ IFIANLYPPC PQPELALGMP  240
PHSDHGLLTL LIQNGINGLQ VQHKGKWVNV NAMPNSFLVN TGDHLEIFSN GKYRSNIHPA  300
VLTNKATRIS LATPTGPSLE TVVTPAPELI NNENRKPAYI GMKYKDYLEL QQSSLLDGKS  360
ILDRFLGQLL HLHITLGFTS PNNQCRAISK DTAPAQSAAA DAAATAGLSS LYFTCPNRLL  420
PIRPDPTVPL VAPSEFLSER PGEPDCPYFI NTQRCKFGMR CKFNHPKDKL AAAVASENSD  480
VFALPERPSE PPCAFYLKMG QCKFGATCKF HHPKDIQIPS AEQENKIGEI GTTIQLEGTG  540
FAVKPPALSF NSKELPVRLG EPDCPFYLKT GSCKKFIQNL QKPGKDGKST SPYLKELKKL  600
IVSWRTWIKS SISSTCCTSE DLLVHLQSLR NADEGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-50	C3H family protein