PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g004730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 277aa MW: 29916.5 Da PI: 5.2236 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 62.1 | 1.1e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r Pd.00g004730.m01 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNAVHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAAGE DRAISKRRKP PGDECIDSDE 120 ELKRSKMLEH TTKSNPNPGM VVDDASESKE EMKENAVIPD ESDPAVRNFD LNADVIENED 180 TKAAVTAAQA ATAAQASSTA AQAAATASQA AATSSQAAAT AAPTSSAGPT SEIKHEEYPG 240 WTSSCVARYL VEGNSSVRSS INLLTSKLDF YLFAPLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-71 | NF-YC family protein |