PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0011874.1_g010.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 67aa MW: 7648.93 Da PI: 9.0825 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 7e-12 | 2 | 25 | 1 | 24 |
--S---SGGGGTS--TTTTT-SS- CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24 +kte C++++++G+C+yG C+Fa Pav_sc0011874.1_g010.1.mk 2 PKTEMCNTWMAGGICPYGRACQFA 25 7**********************8 PP | |||||||
2 | zf-CCCH | 18.1 | 4.7e-06 | 40 | 65 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C +f +G C yG+rC+F H+ Pav_sc0011874.1_g010.1.mk 40 YKTKPCFYFTSGGGCMYGSRCQFRHD 65 9**********************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence |
MPKTEMCNTW MAGGICPYGR ACQFAYGPLE LRTVIRHPLY KTKPCFYFTS GGGCMYGSRC 60 QFRHDRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 5e-25 | C3H family protein |