PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0008713.1_g030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 314aa    MW: 35351.2 Da    PI: 5.0398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0008713.1_g030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.6e-131156146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +g+W +eEde l++ vk+ G+++W++I ++  + Rt+k+c++rw +
  Pav_sc0008713.1_g030.1.mk 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                               79*************************8887799**********87 PP
2Myb_DNA-binding42.21.9e-1367106344
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                +++ eE+   +d+ +q+G++ W++Ia +++ gRt++++k++w
  Pav_sc0008713.1_g030.1.mk  67 KFSLEEERVVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFW 106
                                799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MEGRIEEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSL EEERVVIDLQ AQFGNKWARI ATYLPGRTDN DVKNFWSSRQ KRLARILQAS  120
APTPSKSHKN KREGPVYDEV LTLEAPKFSC SSEGESSSQA QSCSSPTCFG NSEIIKMVPL  180
PDLVKPKLLA LEANPVQQEL APTEKNPWIE PQPLIPFLQN PQPQTDLEFS LETQELLARF  240
DPYFDMLTPL VASELGNGGE QLLMEPPFLE PVGSCGNGER DKIGNPMTPD CVFDDLPVDM  300
FDQIELLPNS PEQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-71MYB family protein