PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006212.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 324aa MW: 36290.8 Da PI: 6.5665

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006212.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.8e-14	119	170	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr ++P + ++++ + a+i A++++k+L+ Pav_sc0006212.1_g040.1.mk 119 QRMTHIAVERNRRRQMNDYLAALRAMMPAC---YAQRGDQASIIGGAINFVKELE 170 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MTLEAVVLQA DRYSYGFKDF HAIGGGGGSW SHGFGFGEDH QEEKVYTDHL MLNNDVGQQG 60 FNNVSLEASM QQSVNDFETN SGPAFNRVFS STEAPAASTG RRKRRRIQNI KNKEDMETQR 120 MTHIAVERNR RRQMNDYLAA LRAMMPACYA QRGDQASIIG GAINFVKELE QLLQSLEGHR 180 GTEQQADHLN LASIFSSFFT FPQYSTCLNS HGHGLYNSSV HSNELMAEKR SAIADVEVTM 240 VESHANVKVL MKKHPRQLLK MVLGLHSLGL MILHVNVTTA DSMILYTFSV KVEDNSQLTS 300 MNEIAADVYE MVGRIQEEAQ HLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	108	GRRKRRRIQ
2	102	106	RKRRR
3	103	107	KRRRI
4	120	131	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-67	bHLH family protein