PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006207.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 311aa MW: 34720.5 Da PI: 7.5499

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006207.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.1e-15	231	255	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+yG++C+FaHg Pav_sc0006207.1_g010.1.mk 231 KTELCNKWEETGTCPYGENCQFAHG 255 8***********************9 PP
2	zf-CCCH	25.3	2.6e-08	268	293	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr a++G C+yG rC+F H+ Pav_sc0006207.1_g010.1.mk 268 YKTQLCRMVAAGGKCPYGHRCHFRHS 293 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
METNAAFPTS PDSSTRDFGS DFASMYRSIF PPKFTLPSSL SLTPSTRSSF SDSDSNSDDH 60 HHNHNATSQR LNQAQLILES QELRDRYDLC SAHLRDLADE LDSLRRENSH LRSANADLVK 120 LLSSQAAFQS FLLSSSSSSA YQSPSTTSFL DDFRRLGFGS LGPRDCVVSD EASDISPTSV 180 IERNRFDVVD RVALPKSISV RSSTRPRVPS QLVSGSATQS QVKVFNQGMV KTELCNKWEE 240 TGTCPYGENC QFAHGVRELR PVMRHPRYKT QLCRMVAAGG KCPYGHRCHF RHSLTEQERL 300 QLAVAAETRF D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	6e-49	C3H family protein