PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0005891.1_g020.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24282.9 Da PI: 6.4025 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.5 | 3.8e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++ap+f+ e+ +f ++hk+FGasnv++ll +lp ++r +a+ s+ yeA+ar++dP+yG+v++i++l Pav_sc0005891.1_g020.1.br 7 PCGACKFLRRKCVTGCIFAPHFCYEEgDVDFSAIHKVFGASNVSRLLVHLPLSDRCKAAMSISYEAQARIQDPIYGCVSHIFAL 90 7***********************99789******************************************************* PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+la lk++ Pav_sc0005891.1_g020.1.br 91 QQQVVNLQAQLAFLKDQ 107 ************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MAGCGSPCGA CKFLRRKCVT GCIFAPHFCY EEGDVDFSAI HKVFGASNVS RLLVHLPLSD 60 RCKAAMSISY EAQARIQDPI YGCVSHIFAL QQQVVNLQAQ LAFLKDQAAQ SFVNGSAVAN 120 PNQAAQSWFH ELENSSNSMP QFNSTHINNP GTTSGNGMNT CHNSIQPTSY YENEIMNSNN 180 SVNGGYENSI RQWDEYNRQW GFQDADELQS VVSSYIHHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-49 | LBD family protein |