PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0005841.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 612aa MW: 66079.2 Da PI: 7.1346

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0005841.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	238	282	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pav_sc0005841.1_g070.1.mk 238 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 282 79****************************************985 PP
2	QLQ	58.3	2.3e-20	169	205	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k Pav_sc0005841.1_g070.1.mk 169 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPLKK 205 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MDFGVMGLEG LVGPEGGATG AAHSLASDPE TKPKGHAPNV PHGSGSVKQQ RSWPAEDDWR 60 TSKMPKNDDL PAPKTMPLQY QGTPLLRSNS LLLADTHRQE QMLSFSNNKS EVTFLNKDGM 120 LERTIQGPDF AYYQRTPALT PSAYTRNAAA YGSGSINPSM HGPFAGVRGP FTPSQWIELE 180 HQALIYKYMT SNVPVPSNLL IPLKKSLYPY GLSGSTGNLA PNSLAWGSYH LGFSGNTDPE 240 PGRCRRTDGK KWRCSRDAVA DQKYCERHIN RGRHRSRKPV EGQPGQAASG TSNSKGVSMT 300 SSTSTPVMPS SGTSNNVATM QNQFKSLQPA GAANPSADAF VNRMQDPRGL PVMSASTIKP 360 KASDSRFNMP KQEIPVEESS QSEFGLVSTD SLLNPSHRNS YISKDFGGSF LDFSDQEAQD 420 QHPLRQFIDD WPKDQSSHSV STWPDEIKSD WTQLSMSIPM TSSEFSSSSS SPTQEKCALS 480 PLRLSREFEP AQMNLGVSNE LSESNQKTNW IPISWGNSMG GPLGEVLTNT TSSGKMCNNS 540 VSPLNLLNEG WDGSPQLGSS PTGVLQKSTF CSLSNSSSGS SPRGENKKNL DGASIYDDVL 600 GSTFASSSVP SL

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MDFGVMGLEG LVGPEGGATG AAHSLASDPE TKPKGHAPNV PHGSGSVKQQ RSWPAEDDWR  60
TSKMPKNDDL PAPKTMPLQY QGTPLLRSNS LLLADTHRQE QMLSFSNNKS EVTFLNKDGM  120
LERTIQGPDF AYYQRTPALT PSAYTRNAAA YGSGSINPSM HGPFAGVRGP FTPSQWIELE  180
HQALIYKYMT SNVPVPSNLL IPLKKSLYPY GLSGSTGNLA PNSLAWGSYH LGFSGNTDPE  240
PGRCRRTDGK KWRCSRDAVA DQKYCERHIN RGRHRSRKPV EGQPGQAASG TSNSKGVSMT  300
SSTSTPVMPS SGTSNNVATM QNQFKSLQPA GAANPSADAF VNRMQDPRGL PVMSASTIKP  360
KASDSRFNMP KQEIPVEESS QSEFGLVSTD SLLNPSHRNS YISKDFGGSF LDFSDQEAQD  420
QHPLRQFIDD WPKDQSSHSV STWPDEIKSD WTQLSMSIPM TSSEFSSSSS SPTQEKCALS  480
PLRLSREFEP AQMNLGVSNE LSESNQKTNW IPISWGNSMG GPLGEVLTNT TSSGKMCNNS  540
VSPLNLLNEG WDGSPQLGSS PTGVLQKSTF CSLSNSSSGS SPRGENKKNL DGASIYDDVL  600
GSTFASSSVP SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-108	GRF family protein