PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003845.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 444aa MW: 49420 Da PI: 7.2022

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003845.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.1e-17	141	190	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pav_sc0003845.1_g120.1.mk 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190 78*****************......55**********************998 PP
2	AP2	42.2	2e-13	233	283	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Pav_sc0003845.1_g120.1.mk 233 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 283 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDD DSSTLNFLSP 60 NDVAADDYAH CDARTIQLFP LAQSVRSSSS SSSSSRKQWL GLSSNSGMEV EPSYYAPAEQ 120 RIVPLQQKVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA 180 YDRAAIKFRG TEADINFNVS DYEDDIKQMS NFTKEEFVHI LRRQSTGFSR GSSKYRGVTL 240 HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK CNGREAVTNF EPNSYDGEIM 300 SEAHNGGSDK SLDLNLGIAP PLVSELQKNN SNLSSFPVQL GCDDIPIHMR TRNENSAPAP 360 MRAQLSHGSM VASEEPPIMS NINSSFFPIQ MHHQDSLLQQ PLHHQLLSLN FIFLTQLFTT 420 TIFHRRQSPT TYPVSIAGAE NQNQ

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDD DSSTLNFLSP  60
NDVAADDYAH CDARTIQLFP LAQSVRSSSS SSSSSRKQWL GLSSNSGMEV EPSYYAPAEQ  120
RIVPLQQKVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG TEADINFNVS DYEDDIKQMS NFTKEEFVHI LRRQSTGFSR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK CNGREAVTNF EPNSYDGEIM  300
SEAHNGGSDK SLDLNLGIAP PLVSELQKNN SNLSSFPVQL GCDDIPIHMR TRNENSAPAP  360
MRAQLSHGSM VASEEPPIMS NINSSFFPIQ MHHQDSLLQQ PLHHQLLSLN FIFLTQLFTT  420
TIFHRRQSPT TYPVSIAGAE NQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-98	AP2 family protein