PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003845.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 358aa    MW: 40807 Da    PI: 6.1269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003845.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                k  lC f+ + G+C  G +CkF+H+
  Pav_sc0003845.1_g040.1.mk  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                                6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPISD PSKTAAKKKK  60
EEEKAKDKEL NELFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DHDTMEEWDQ ETLEKVVESK KNEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKNCH YRHALPPGYV LKSQMKALLE EEAEKIPIEE EIENQRAKVT TSTPMTPELF  240
MQWKKKKMAE RDAGLAAQMA ERAKNDRMSG RELFLSDSSL FVDDVEAHEK YQRDQEPAVA  300
EQKVSDNSNR DRPSDSATSG GDAKVTNDDD DDELDMDELN ELEASLSKVT IQEPGTTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-159C3H family protein