PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003708.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 412aa MW: 46470.2 Da PI: 6.3174

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003708.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Pav_sc0003708.1_g110.1.mk 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	22.4	2.2e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Pav_sc0003708.1_g110.1.mk 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.1	2.4e-06	148	170	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg Pav_sc0003708.1_g110.1.mk 148 HAICS-FAAAGNCPRGEKCPHIHG 170 57899.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ 60 SSGSSSSTIS QQSLAVDSLS LAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNGS 120 LDDDDYDDNG DNDDDGAGAT RSTRPEDHAI CSFAAAGNCP RGEKCPHIHG DICPSCGKHC 180 LHPYRPMERE EHMKTCEEKQ KQLEALKRSQ EIECSVCLER VLSKPTVAER KFGILSECDH 240 PFCVSCIRNW RSSSPTSGMD VNSALRACPI CRKLSYFVIP SVIWYNTKEE KQEIIDSYKS 300 RLRSIDCKHF DFGNGNCPFG TSCFYKHTVK PGSYVWKFHR PPPRRPPPRR YDIVPMDVIF 360 HMFEHLEEWD DYILEDLENE DLNPLERELL MHMGFDTSDS SEDEIDLWPV SY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTIS QQSLAVDSLS LAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNGS  120
LDDDDYDDNG DNDDDGAGAT RSTRPEDHAI CSFAAAGNCP RGEKCPHIHG DICPSCGKHC  180
LHPYRPMERE EHMKTCEEKQ KQLEALKRSQ EIECSVCLER VLSKPTVAER KFGILSECDH  240
PFCVSCIRNW RSSSPTSGMD VNSALRACPI CRKLSYFVIP SVIWYNTKEE KQEIIDSYKS  300
RLRSIDCKHF DFGNGNCPFG TSCFYKHTVK PGSYVWKFHR PPPRRPPPRR YDIVPMDVIF  360
HMFEHLEEWD DYILEDLENE DLNPLERELL MHMGFDTSDS SEDEIDLWPV SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-133	C3H family protein