PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003685.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 360aa MW: 40344.4 Da PI: 6.8893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003685.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	167	213	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Pav_sc0003685.1_g110.1.mk 167 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 213 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QHQMQQQQQH QMQQQQHHQQ QGLIFPHDHQ 60 APPPILQPWT LPPIHSFNPS AHDQFLLPTP PPPIPSSSSY ASFFNRRAPL QFTYDGSASE 120 HHHHLRILSE TLGPMVQPGS APFGLQAELG KLTAQEIMDA KALAASKSHS EAERRRRERI 180 NNHLAKLRSL LPSTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTEM DELIVDDASD 240 EDGKFVIKAS LCCEDRSDLL PDLIKTLKAL RLRTLKAEIT TLGGRVKNVL FITGEEESSS 300 SGGEQVQQHQ GPHQHQQQHY CISSIEEALK AVMEKTGGEH EQSSSGSVKR QRTNNINILN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QHQMQQQQQH QMQQQQHHQQ QGLIFPHDHQ  60
APPPILQPWT LPPIHSFNPS AHDQFLLPTP PPPIPSSSSY ASFFNRRAPL QFTYDGSASE  120
HHHHLRILSE TLGPMVQPGS APFGLQAELG KLTAQEIMDA KALAASKSHS EAERRRRERI  180
NNHLAKLRSL LPSTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTEM DELIVDDASD  240
EDGKFVIKAS LCCEDRSDLL PDLIKTLKAL RLRTLKAEIT TLGGRVKNVL FITGEEESSS  300
SGGEQVQQHQ GPHQHQQQHY CISSIEEALK AVMEKTGGEH EQSSSGSVKR QRTNNINILN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-93	bHLH family protein