PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003685.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 502aa MW: 55842.6 Da PI: 8.666

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003685.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	139.2	3.3e-43	167	321	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................s 66 g kdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k++ikel + s Pav_sc0003685.1_g070.1.mk 167 GNKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTSIKELKQHlnisplaayscstnanatstS 250 78***********************************************************999999999987665433331 PP TCP 67 sssasec.eaesssssasnsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + +a+++ss+++ns+ + + + + +++k++ + +a+esr +arararertrek++++++ Pav_sc0003685.1_g070.1.mk 251 ------TiTAKMNSSTSENSEVAskiqetaigD--VHSIGTLEREKKNRKLCVVARESRVEARARARERTREKKMMRTR 321 ......122222222222222224444544322..222233333333444578888*****************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MFPSSSSASN YQLPFPCDTN QQPQLHEKSS TNIIDQHGHE NPNSISHDDH HIRQYYSHYS 60 EDHQQQAPNN FLEHDGLLLS YLLSQQQLLV GSSSPNMNSA TSHHVQAHDT TEISVVASNS 120 NKKVMDRVDE DRTSPAATSK GCSSKKKSNT SNGESKNAKA PRKRSSGNKD RHSKIYTAQG 180 PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFTKSK TSIKELKQHL NISPLAAYSC 240 STNANATSTS TITAKMNSST SENSEVASKI QETAIGDVHS IGTLEREKKN RKLCVVARES 300 RVEARARARE RTREKKMMRT RSGLDQYQNL RKQSPDHDQV PQNPNNDQFS GGHYLWSSNC 360 PNDQLFEPGM MMNSMVMSIN HHDEKVVGST TIPSGANSED YDFPSFPGNW GQFNSKNITG 420 NNVLQVDPNP SNSSTMATAP PTPYPLEQKP SSVFMSTSSS MQEQKPSSIF VTTLIAEDQN 480 PTTSSNFGTN SSIVLQSQFL GN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MFPSSSSASN YQLPFPCDTN QQPQLHEKSS TNIIDQHGHE NPNSISHDDH HIRQYYSHYS  60
EDHQQQAPNN FLEHDGLLLS YLLSQQQLLV GSSSPNMNSA TSHHVQAHDT TEISVVASNS  120
NKKVMDRVDE DRTSPAATSK GCSSKKKSNT SNGESKNAKA PRKRSSGNKD RHSKIYTAQG  180
PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFTKSK TSIKELKQHL NISPLAAYSC  240
STNANATSTS TITAKMNSST SENSEVASKI QETAIGDVHS IGTLEREKKN RKLCVVARES  300
RVEARARARE RTREKKMMRT RSGLDQYQNL RKQSPDHDQV PQNPNNDQFS GGHYLWSSNC  360
PNDQLFEPGM MMNSMVMSIN HHDEKVVGST TIPSGANSED YDFPSFPGNW GQFNSKNITG  420
NNVLQVDPNP SNSSTMATAP PTPYPLEQKP SSVFMSTSSS MQEQKPSSIF VTTLIAEDQN  480
PTTSSNFGTN SSIVLQSQFL GN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-32	TCP family protein