PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003135.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 889aa    MW: 98481.7 Da    PI: 6.5369
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003135.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.4e-24127228199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Pav_sc0003135.1_g100.1.mk 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfaQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 208
                                99*****************************8554444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Pav_sc0003135.1_g100.1.mk 209 DSVLFI--WNEKNQLLLGIRRA 228
                                ******..8899999****997 PP
2Auxin_resp114.11.3e-37253335183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+t+s F+++YnPras+seFv+++ k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Pav_sc0003135.1_g100.1.mk 253 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDP-RWPNSHWRSVK 335
                                79*********************************956689*******************************.********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    
MRLSSAGFSP QSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSLQEQKDG YLPAGLGNPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFAQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL TKYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPPGL PSFHGIRDDD LGMNSQLMWL RGDNGDRGIQ SLNFPGIGVT  420
PYMQPRLDAS MIGLQTDMYQ AMAAAALQEM RAVDPSRPLP TSLLQFQQTQ NLPSRSTALM  480
HPHMVQESQS QQAFLQSVQE NHRQSQPQTQ TQSHLLQQQL QHQNSFSNQQ QLVDHQQIPS  540
AVSAMTQFSS ASQSQSPSLQ VATSLCQQQS FSDSNGNPAT STILSPLHSL MGSFPQDEPS  600
HLLNLPRTNQ LISSGAWPSK RAAIEPLLSS GVSQCVLPHV EQLGPPQTTI SQNSISLPPF  660
PGRECSIDQE GSTDPQSHLL FGVNIESSSL LMQNGMSNLR GVGSDSDSTT MHFPPNYLST  720
TGTDFSLNPA VTPSSCIDES GFLQSPENVG HGNPLNNNFV KVYKSGSFGR SLDITKFSSY  780
HELRGELAHM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPH  840
EVQQMGKRGL DLLKSVPTQR LSNNSCDDYG SRQDSRNLSG ITSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein