PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003135.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 269aa    MW: 29296.7 Da    PI: 6.9406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003135.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.96.4e-428106199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq
  Pav_sc0003135.1_g010.1.mk   8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGFISILQ 91 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallke 99 
                                 +l+q +++l  +k+
  Pav_sc0003135.1_g010.1.mk  92 GKLKQIQTDLYNAKK 106
                                ********9988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH  60
REDAVTSLAY EAEARLRDPV YGCVGFISIL QGKLKQIQTD LYNAKKDLSA YIGPQALMIP  120
VFHPSQQTDV NGSVPMLGIS NCPPPQHGCS GGQLMQQQQQ QQQQLFEAHQ QELVRFNVNG  180
MDAAAANSVT GNGFNQMHAA AGTNGVVSTG SLGLGGGFDN NPYNHQIQPQ QTAAATHHQH  240
SLDYQLQAQL MLQPHQAQQS QLKSEGEES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.15e-66LBD family protein