PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002776.1_g380.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 347aa    MW: 38692.7 Da    PI: 4.7195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002776.1_g380.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05223245123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ykCp+C+  F  ++nL  H+  H
  Pav_sc0002776.1_g380.1.mk 223 YKCPKCPCEFAFSENLDAHMADH 245
                                9*******************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MEKPVYASIP LGLHFEINDN EIPLQNSGER NYVFNNEQFA TIVTTSRSSC SNVNSPSRNQ  60
LTLGMSQLSL SKFVAAYRRD KFIADLSQTV CFQSNENSLL WFMQPSFSSA FEVSHNLCYD  120
TSSHNQLKDP TRLSTIELTG NNDFPHTPVS LSFPGRNFSY FSWNEPDLYV ERTNLSELGS  180
YQPSNPIVNS LAAQLQNNVG SDPSLTNGVS TRRPLHRSKH TPYKCPKCPC EFAFSENLDA  240
HMADHCRIEA QTNLMISSDS ASRWMNSDSP MIHSQFTWNL KDLAGTEASS SNSDGETSNE  300
DVEKEEMARE KAFLLANNAE NEGQPTANLD AEDAVSSIIK SIKEVAI