PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0002475.1_g180.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24046 Da PI: 7.0919 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.2 | 1.5e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g+ Pav_sc0002475.1_g180.1.mk 2 SCNGCRVLRKGCSDNCMLRQCLqwiedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLIFEAVGRTINPVNGATGL 85 6*********************************************************************************** PP DUF260 80 ilklqqqleqlkaelall 97 +l+++++++q+++e++l+ Pav_sc0002475.1_g180.1.mk 86 LLSGKWEVCQAAVETVLR 103 ************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MSCNGCRVLR KGCSDNCMLR QCLQWIEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PALFQSLIFE AVGRTINPVN GATGLLLSGK WEVCQAAVET VLRGGTLEPL PEYTRDDHQN 120 CVHDHHVRLQ RQSTKKKRSS DLAFDDTDDH DVANCQLPDL DLCLTAAGGL TSRTKRGDCR 180 AGTPSSAEES ETTTLGSSSS SADHCSGNNL KGTTKLLRLF I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-64 | LBD family protein |