PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002456.1_g240.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1245aa MW: 132239 Da PI: 6.4659

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002456.1_g240.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.4e-09	208	253	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W++ Ed+ l+ +v+++G g+W+ I r Rt++q+ rw Pav_sc0002456.1_g240.1.mk 208 RKKWSEAEDLELIAGVRRYGEGNWANILRGDFkGERTANQLSQRWK 253 789**********************98522359********7 PP
2	Myb_DNA-binding	25.4	3.3e-08	807	851	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I r g gRt+ q+ rw Pav_sc0002456.1_g240.1.mk 807 RKKWSEAEDFELIAAVQKCGEGNWANILRadFKG-GRTAGQLSQRW 851 789**********************8731455.**9999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 1245 aa Download sequence
MVEKPKDPEK SYITEEDTAN LLQRYQVANV LQLLQEVAHS QDVKIDWNRL VEKTSTGISN 60 AREYQMLWRH LAYSEAFVDN FDNGAQPVDD DSDLEHEMEA FPAVSGEDST EAAACVKVLI 120 ASGLPSDSTH RSSATVEAPL TINIPNGQPS RTHQNSQPTC SMQGMNITVP VSVQKQPLLA 180 MTTSTGATAE GGDANGPASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK 240 GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT 300 AAGTNTHSKF GGTNATTNSV PSTAAEEELQ SQQGLKPAKP YQMGLLGSTS KSQVTSKRTL 360 TKPNSNTDGM VRATAVAAGA RIASPSDAAS LLKAAQAKNA VHVLPTGGSS IQSSLPGSMR 420 THPDPHPNLH YMHTGLAAMP VSTPLSTAVT PSATHPASLK ALPQMSQHAP TNSTLLSKQI 480 KDVSCSLDSE PGCTPTEQVQ DGAVISENGQ NEEGQKDKVD SPDQKAELKN LSTSAENLVG 540 SLDIKGDETD NIAGIGVQSE ERQSAKGNET LCSLKGDDPF AADSCENQSA SEQQIGLVSI 600 VGDGCNGKQV LGKEETGWMD SGRYTATTVL ALLHEVAHWP EAKIDWIRLV AKTSTGISNA 660 REYQMLWRHL AYREALVDKF DNGSQPLDDD SDLEYELEAF PAVCGEGSTE AAACVKVLIA 720 SGLPSDSSHQ NGTTVEAPLT INIPNGQPSR THENSEPTCS VQGKNITVPV SVKKQPLPAA 780 TTSSVATADG GDANGSASNS MAPRKKRKKW SEAEDFELIA AVQKCGEGNW ANILRADFKG 840 GRTAGQLSQR WAIIKKRNQE LNLRGNSSGK LSEAQLAARH SLSVALNMPN LTAKTIGTAG 900 TNAHNKFARK VATSNPVLTT GTKAEPQSQQ DLKPTKKPYQ MELLGSTTKS RVTSKNTLTK 960 PNCNDDDMVR AIAVAAGARI ASPSDAASLL KAARAKNAVH IMPTGGSSIQ SSLPGGVSTH 1020 SEPHPNLHMR TSLAGITLST PPPTDVTPSA IHPGSSKALP QTSQHTPTNG TLLSKQIKGV 1080 SCSLDAELPS KQEVRTEEGS IIAELGCTPI MQAQDEAVIS RNGQDVQVKD DKVDSPNQKA 1140 ELKILLSNAE NPVSSLNIER DETHHKAVIG VQGEQRQRAK DNEVVCSLIG GGDPSAVDCS 1200 EKPSTTEEQT DLLGTVTNGC NGKHVLSKEE AGIKINGGHQ GEAPL

Sequence ? help Back to Top

Protein Sequence Length: 1245 aa Download sequence

MVEKPKDPEK SYITEEDTAN LLQRYQVANV LQLLQEVAHS QDVKIDWNRL VEKTSTGISN  60
AREYQMLWRH LAYSEAFVDN FDNGAQPVDD DSDLEHEMEA FPAVSGEDST EAAACVKVLI  120
ASGLPSDSTH RSSATVEAPL TINIPNGQPS RTHQNSQPTC SMQGMNITVP VSVQKQPLLA  180
MTTSTGATAE GGDANGPASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK  240
GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT  300
AAGTNTHSKF GGTNATTNSV PSTAAEEELQ SQQGLKPAKP YQMGLLGSTS KSQVTSKRTL  360
TKPNSNTDGM VRATAVAAGA RIASPSDAAS LLKAAQAKNA VHVLPTGGSS IQSSLPGSMR  420
THPDPHPNLH YMHTGLAAMP VSTPLSTAVT PSATHPASLK ALPQMSQHAP TNSTLLSKQI  480
KDVSCSLDSE PGCTPTEQVQ DGAVISENGQ NEEGQKDKVD SPDQKAELKN LSTSAENLVG  540
SLDIKGDETD NIAGIGVQSE ERQSAKGNET LCSLKGDDPF AADSCENQSA SEQQIGLVSI  600
VGDGCNGKQV LGKEETGWMD SGRYTATTVL ALLHEVAHWP EAKIDWIRLV AKTSTGISNA  660
REYQMLWRHL AYREALVDKF DNGSQPLDDD SDLEYELEAF PAVCGEGSTE AAACVKVLIA  720
SGLPSDSSHQ NGTTVEAPLT INIPNGQPSR THENSEPTCS VQGKNITVPV SVKKQPLPAA  780
TTSSVATADG GDANGSASNS MAPRKKRKKW SEAEDFELIA AVQKCGEGNW ANILRADFKG  840
GRTAGQLSQR WAIIKKRNQE LNLRGNSSGK LSEAQLAARH SLSVALNMPN LTAKTIGTAG  900
TNAHNKFARK VATSNPVLTT GTKAEPQSQQ DLKPTKKPYQ MELLGSTTKS RVTSKNTLTK  960
PNCNDDDMVR AIAVAAGARI ASPSDAASLL KAARAKNAVH IMPTGGSSIQ SSLPGGVSTH  1020
SEPHPNLHMR TSLAGITLST PPPTDVTPSA IHPGSSKALP QTSQHTPTNG TLLSKQIKGV  1080
SCSLDAELPS KQEVRTEEGS IIAELGCTPI MQAQDEAVIS RNGQDVQVKD DKVDSPNQKA  1140
ELKILLSNAE NPVSSLNIER DETHHKAVIG VQGEQRQRAK DNEVVCSLIG GGDPSAVDCS  1200
EKPSTTEEQT DLLGTVTNGC NGKHVLSKEE AGIKINGGHQ GEAPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	210	KKRKK
2	805	809	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-81	MYB_related family protein