PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002449.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 529aa MW: 58515 Da PI: 6.056

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002449.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.5e-07	276	297	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Pav_sc0002449.1_g060.1.mk 276 FCAICGKGFKRDANLRMHMRGH 297 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MDHKEKLCAD AWANPSSGND LTNEISADCP TFANFKPQLH QQKWEDPSIL DYGGIGIEPS 60 FQEFNQPSET QTSLPCNSNN DTKMADREDG RMCETPQANK SQDWDPRTML NNLTFLEQKI 120 HQLQDLVHLI VGRRGQVLGR PDELVAQQQQ LITADLTSII AQLISTAGSL LPSVKHTLST 180 TTPSIGQFGQ LGGSFVPSGV GNDASVKLQN SNGSKLADQS NHTDLISNYG TEQNYSIEEH 240 ESKDEEDADE GENLPPGSYE ILQLEKEEIL APHTHFCAIC GKGFKRDANL RMHMRGHGDE 300 YKTPAALAKP NKESSSEPTL IKRYSCPYAG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK 360 SYTCSRCNTK KFSVIADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL 420 DETKGTQGPA DHGEGSEASN RVGNINFSFS STAPGGVGVV QSLMDVKESI NDPTSYFSPL 480 NFETCNFDGF HEFPRPPFED SESSFSFLMP GSCNYTHKTG GEPNSNNLD

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MDHKEKLCAD AWANPSSGND LTNEISADCP TFANFKPQLH QQKWEDPSIL DYGGIGIEPS  60
FQEFNQPSET QTSLPCNSNN DTKMADREDG RMCETPQANK SQDWDPRTML NNLTFLEQKI  120
HQLQDLVHLI VGRRGQVLGR PDELVAQQQQ LITADLTSII AQLISTAGSL LPSVKHTLST  180
TTPSIGQFGQ LGGSFVPSGV GNDASVKLQN SNGSKLADQS NHTDLISNYG TEQNYSIEEH  240
ESKDEEDADE GENLPPGSYE ILQLEKEEIL APHTHFCAIC GKGFKRDANL RMHMRGHGDE  300
YKTPAALAKP NKESSSEPTL IKRYSCPYAG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK  360
SYTCSRCNTK KFSVIADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL  420
DETKGTQGPA DHGEGSEASN RVGNINFSFS STAPGGVGVV QSLMDVKESI NDPTSYFSPL  480
NFETCNFDGF HEFPRPPFED SESSFSFLMP GSCNYTHKTG GEPNSNNLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein