PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002445.1_g310.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 223aa MW: 23923.1 Da PI: 8.3234

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002445.1_g310.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+ Pav_sc0002445.1_g310.1.mk 2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGL 85 6*******************9999999999************************************************ PP DUF260 80 ilklqqqleqlkaelal 96 +++++++++q+++e++l Pav_sc0002445.1_g310.1.mk 86 LSSGNWHVCQSAVETVL 102 **********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVFTPSLHE 120 SSETSSRGAC TLQNLYYPSV PSAYYDAERI QPFDAGFSLK PNLSAGEGGR GRGMRSSSCV 180 STAVEKRRRD TVSFSSEESV MTSTTSFERG GGLKDRKVLN LFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	6e-64	LBD family protein