PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002445.1_g300.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 281aa    MW: 29402.6 Da    PI: 8.8785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002445.1_g300.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033112134123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ykC+ C+k F++   L  H  +H
  Pav_sc0002445.1_g300.1.mk 112 YKCSVCNKAFPSYQALGGHKASH 134
                                9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MALQALNSPT TAGASPFRFE EAASKINYVE PWTKRKRSKR PRLDSPTTEE EYLALCLIML  60
ARSGSGSTAS ATTATATTAT NSATSHHMIT LSPSNASHQE PSTSAQPAKL SYKCSVCNKA  120
FPSYQALGGH KASHRKGAAG SAAEGPSTSS NTTTSGTTTV TASGRTHECS ICHKSFPTGQ  180
ALGGHKRCHY EGGVGASTAT ATATATATTT SAVTSSEGVG STSHQAVSHG HRETFDLNMP  240
ALPEFSRDFF LCGDDEVESP HPAKKPRILT IMKPKLEISQ N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-48C2H2 family protein