PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002393.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 359aa MW: 40344.3 Da PI: 4.4782

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002393.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.9e-12	192	235	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Pav_sc0002393.1_g050.1.mk 192 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 235 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MELTQHGFLE ELLLAPRRDS WSTYSSNSSG LNELFPINGW SFDSFEENPV LVSSVNNPPF 60 SGFSTQTDQP PSFEECPFST DHHQASSYPF VDGLCTVPEI DSSYTKDNDP TAPPFPSQDQ 120 DYPSMVEDEE FGGFLGSENQ RSCLEESKNI ATCKVEMEQQ ATDHIPSAFN MGLCGEKRSK 180 AKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDTID YMKELLERIN 240 KLQEEGIEEG TNQINLMDIS KELKPSEVLV RNSPKFEVER RDMDTRIDIC CAAKPGLLLS 300 TVNTIEALGL EIQQCVISCF NDFSMQASCS EGAEQRTLLS PEDIKQALFR NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MELTQHGFLE ELLLAPRRDS WSTYSSNSSG LNELFPINGW SFDSFEENPV LVSSVNNPPF  60
SGFSTQTDQP PSFEECPFST DHHQASSYPF VDGLCTVPEI DSSYTKDNDP TAPPFPSQDQ  120
DYPSMVEDEE FGGFLGSENQ RSCLEESKNI ATCKVEMEQQ ATDHIPSAFN MGLCGEKRSK  180
AKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDTID YMKELLERIN  240
KLQEEGIEEG TNQINLMDIS KELKPSEVLV RNSPKFEVER RDMDTRIDIC CAAKPGLLLS  300
TVNTIEALGL EIQQCVISCF NDFSMQASCS EGAEQRTLLS PEDIKQALFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	183	KRSKAKK
2	195	202	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-92	bHLH family protein