PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002318.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 326aa    MW: 36226.8 Da    PI: 4.853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002318.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.71.7e-16210248237
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 
                                +Dg+ WrKYGqK + +s+++r+YYrCt++   +C+++k 
  Pav_sc0002318.1_g180.1.mk 210 NDGHGWRKYGQKRILNSKHSRNYYRCTHKfeqSCKATKY 248
                                8***************************99999***995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MASHHRNHSS SCDYIVSPHP TAFEYSCPLS GLSSTIDPYD HEGDVMSSLI VEPYYFDDEL  60
SWPESVLSNG GRVKEELMQG RELAGKLCRV FDDHKSTLVS GFGGGGGGGV GSAEDLVDKI  120
LGSFANTLLI LNGKESDGEI VSGDQIQGIS SGGSADSSSW DANHTAAVIK SEDFYEESCK  180
STSTFKDRRG SYKRRKTSHS WTRDTPTLTN DGHGWRKYGQ KRILNSKHSR NYYRCTHKFE  240
QSCKATKYEE SIIKEEIPPT SDDCVMTSHD NHSWLCDYLV SPDLTMFESF GPPSGFTSTL  300
DEFDHEDVIS RLLMGSFDLD EVLQYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-19WRKY family protein