PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001974.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 297aa    MW: 31290.3 Da    PI: 9.3626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001974.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063861225
                               -S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                               k ++C  f+ t  C++G++C+F H
  Pav_sc0001974.1_g100.1.mk 38 KSKPCTKFFSTAGCPFGESCHFLH 61
                               7789******************** PP
2zf-CCCH23.78.6e-08102127227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                k +lC+ +     Ck+Gd+C+FaHg+
  Pav_sc0001974.1_g100.1.mk 102 KSRLCNKYNSAEGCKFGDKCHFAHGE 127
                                6799******99************96 PP
3zf-CCCH36.58.1e-12264288126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                ykt+lC++f + GtC +G+rC+FaHg
  Pav_sc0001974.1_g100.1.mk 264 YKTKLCDNFTK-GTCTFGERCHFAHG 288
                                9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MMDTRKRGRH EAGAFHANGG FKKNKQELES FSTGVGSKSK PCTKFFSTAG CPFGESCHFL  60
HYVPGGYNAV AQMMNLAPAP QASRNVAPPP SNSNGSSSSA VKSRLCNKYN SAEGCKFGDK  120
CHFAHGEWEL GKHLAQSHDD PRAMGPGPGR MTNWMEPPLA GPASSFGASS TAKISVDASL  180
AGAIIGKGGV NSKQICRQTG AKLSIREHES DPNLRNIELE GTFEQIQQAS AMVRELIVTV  240
SMSGPAKTPG GGAPGAPAPP GSNYKTKLCD NFTKGTCTFG ERCHFAHGAA ELRKSGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-96C3H family protein