PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001938.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 395aa    MW: 43778.1 Da    PI: 7.1302
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001938.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-11303324627
                                -SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                C++f +tG+C+yGd+C++ H++
  Pav_sc0001938.1_g020.1.mk 303 CNRFVKTGFCPYGDSCRYLHPK 324
                                ********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MASVGVAPTS GLREPSGHAV GVDKLPEEMN DMKIRDDKEM EATVVDGNGT ETGHIIVTTI  60
GGRNGQPKQA KCLETGETVA IKKVLQDKRA LSYIHRCIGV CHRDIKPQNL LVNPHTHQVK  120
LCDFGSAKVL VKGEPNISYI CSRYYRAPEL IFGATEYTTA IDVWSVGCVL AELLLGQPLF  180
PGESGVDQLV EIIKVLGTPT REEIKCMNPN YTEFKFPQIK AHPWHKIFHK RMPPEAVDLV  240
SRLLQYSPNL RCTALDALIH PFFDELRDLN TRLPNGRFLP PLFNFKSHDP SHAYTESLTK  300
GVCNRFVKTG FCPYGDSCRY LHPKNNQQNM VTQGAPGLSD NNQSSTFQEN QLVGGSSLPD  360
VVVRDSMGMS WGNLPPSLMP PPESGYPPLP FVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-27C3H family protein