PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001888.1_g110.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 306aa MW: 35232.3 Da PI: 10.0815 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.7 | 8.6e-13 | 26 | 112 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ + k++ l++p+kf+ ++g++ s + l+ +sg +W+++l r+ ++ +l kGW +F L+ ++vF ++g+s+f Pav_sc0001888.1_g110.1.mk 26 SKGTCKQSKLRIPNKFLMKYGYD--LSNPVFLKLPSGSEWKIEL--RRWEDEAWLDKGWPKFSTFYSLDYCHSLVFGYEGKSKF 105 444556778***********999..6667***************..88888899*************************99999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v++f++ Pav_sc0001888.1_g110.1.mk 106 --CVHIFDR 112 ..*****98 PP | |||||||
2 | B3 | 56.8 | 4.1e-18 | 211 | 298 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+ +t+s++++s + + kf+++h ++ + +l+ ++gr+W v l ++++++ +++GW +Fv++n+L+ gD++vF l Pav_sc0001888.1_g110.1.mk 211 FIVPMTRSYTNRSF-VNIGAKFIKKHLLNRSR-DNAILRVSDGRTWPVSL--GQQGKGVRFQTGWMKFVQDNQLEIGDVCVFVL 290 66778888888776.***********777555.48999************..999999*************************9 PP -SS.SEE.. CS B3 85 dgr.sefel 92 +++ ++ Pav_sc0001888.1_g110.1.mk 291 SNDiKRL-I 298 9885544.4 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MASFQRKIPN RPTFSTNTPH FLKIISKGTC KQSKLRIPNK FLMKYGYDLS NPVFLKLPSG 60 SEWKIELRRW EDEAWLDKGW PKFSTFYSLD YCHSLVFGYE GKSKFCVHIF DRNFTEIAYP 120 LTMPEMKETD EVDDSESESE SDDDFSDDSV EILDNFLPHS RKSSSSGKSE FPAKRHCSGM 180 STTRRVVKRT GSAKVIALQR AKAFKSDKPS FIVPMTRSYT NRSFVNIGAK FIKKHLLNRS 240 RDNAILRVSD GRTWPVSLGQ QGKGVRFQTG WMKFVQDNQL EIGDVCVFVL SNDIKRLIDV 300 VLFRAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-19 | B3 family protein |