PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001580.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 562aa MW: 64948 Da PI: 9.9067

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001580.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	458	477	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+++a+ G C yGd+CkF+H Pav_sc0001580.1_g030.1.mk 458 MCQYYAQ-GRCYYGDNCKFSH 477 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MATSEQSKYH QYEEKDGDFL ENGESDPEYD SDASMKDPSY SSTLEETHAN FSKLSIKRNS 60 KTRIVKYIDL GSEADLNGQE VVLPELDEKD EKSFEMVRKI IEARQIEKLK VEQCKLYLRK 120 NGLRLTGNKD TLIRRIKEHL EILNGGGEKK YPASSFVLNC KGDACTSDVV MFEQNVYEIF 180 DIASRSGRGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN 240 LYRLKTLRQR WEDEGERQKV LMEKHSRGSL ARTAKEARVQ EKEMRKMLKR NRVSRKEELK 300 KNQSRFNSTS VLKTSVQPQQ SGSLVNSANL HQLVGISVHS GNTKVCAQQL GLFTDLSRDP 360 SLKPATQIHQ SGFVVYSQNP ATQPPAPKSG FFVDSGKVTI QPQLTKNTTM QGGYFNQASQ 420 KLNESRNSNN TERVYNKRQP LTSVNHFLPT SPRGQKQMCQ YYAQGRCYYG DNCKFSHEMR 480 GNYNERREER WPHEQRNLCH YGDSSKFSHE MRGNYNERRE ERWPHEQRNL CHYGDNRKFS 540 YGMRENYSQR SEKRWSLGQR RS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MATSEQSKYH QYEEKDGDFL ENGESDPEYD SDASMKDPSY SSTLEETHAN FSKLSIKRNS  60
KTRIVKYIDL GSEADLNGQE VVLPELDEKD EKSFEMVRKI IEARQIEKLK VEQCKLYLRK  120
NGLRLTGNKD TLIRRIKEHL EILNGGGEKK YPASSFVLNC KGDACTSDVV MFEQNVYEIF  180
DIASRSGRGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN  240
LYRLKTLRQR WEDEGERQKV LMEKHSRGSL ARTAKEARVQ EKEMRKMLKR NRVSRKEELK  300
KNQSRFNSTS VLKTSVQPQQ SGSLVNSANL HQLVGISVHS GNTKVCAQQL GLFTDLSRDP  360
SLKPATQIHQ SGFVVYSQNP ATQPPAPKSG FFVDSGKVTI QPQLTKNTTM QGGYFNQASQ  420
KLNESRNSNN TERVYNKRQP LTSVNHFLPT SPRGQKQMCQ YYAQGRCYYG DNCKFSHEMR  480
GNYNERREER WPHEQRNLCH YGDSSKFSHE MRGNYNERRE ERWPHEQRNL CHYGDNRKFS  540
YGMRENYSQR SEKRWSLGQR RS