PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001556.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 323aa    MW: 35846.8 Da    PI: 4.6126
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001556.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.7e-383488660
                     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                                +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  Pav_sc0001556.1_g080.1.mk 34 PDCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 88
                               57***************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MFSAPVEQML QCPSGPFIMM DKRSWNKPHI EVAPDCPRCA SSNTKFCYYN NYSLSQPRYF  60
CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK AAKLSQADRA SLSYIHHNSS SSDDTSGQYS  120
SGTDNQPGGG NGSDIDLAAV FAKFLNNNSS SPADEHDHLD QDHEPNLVNS SSELNDVDGS  180
QNSSKADQDL VEAVDHLLGG LVAPDHYDHH DHQHQQIQEE NVQSFMGINH DQQDDMNIHQ  240
FGLQGLLGED DQVVQDVFWS DDAATTSSLT SSTASFSWQP MVHLQELDYS LPSDDDQMKI  300
STNLCSDNWS SFDFSGFEVF SRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-40Dof family protein