PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001529.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 373aa MW: 42568.9 Da PI: 6.6828

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001529.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.1	2e-27	251	336	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++ ev+ Li++r +e+++r +g++k+p Wee+s m + g++rs+ +Ckekwen+nk++k+ ++kkr s + +tcpyf+ Pav_sc0001529.1_g110.1.mk 251 RWPEAEVQSLITLRAALEHKFRiAGNSKGPVWEEISLGMYDMGYNRSARKCKEKWENINKYFKRSMGTDKKR-SANAKTCPYFH 333 8*******************559******************************************8.67778**** PP trihelix 84 qle 86 +le Pav_sc0001529.1_g110.1.mk 334 ELE 336 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MEALTADRQI PNPAAFPEQI APFPESTDHH LLFANPTAVV HSPPQKLRPI RCSSGRCPAI 60 ELPDSAGNLG DGGPAHVGSG TWGDEGEDES SSSPDDDGDE YLKAEGTERM KRKRKRRSRT 120 GGRLERVEIF LESLVMKVME KQEQMHKQLI EMIEKREKER IAREEDWKQQ ELDRMKRDEE 180 IRAQETSRSL TLISFIQNFL GHEIQVPKPA PAPISVVPNY DHRCMDENGG ADNGIQRDTM 240 VMLKCDQTNR RWPEAEVQSL ITLRAALEHK FRIAGNSKGP VWEEISLGMY DMGYNRSARK 300 CKEKWENINK YFKRSMGTDK KRSANAKTCP YFHELELLHK SGLVSSEDGF KFTSNQNESK 360 IEKQDNREKG VTE

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MEALTADRQI PNPAAFPEQI APFPESTDHH LLFANPTAVV HSPPQKLRPI RCSSGRCPAI  60
ELPDSAGNLG DGGPAHVGSG TWGDEGEDES SSSPDDDGDE YLKAEGTERM KRKRKRRSRT  120
GGRLERVEIF LESLVMKVME KQEQMHKQLI EMIEKREKER IAREEDWKQQ ELDRMKRDEE  180
IRAQETSRSL TLISFIQNFL GHEIQVPKPA PAPISVVPNY DHRCMDENGG ADNGIQRDTM  240
VMLKCDQTNR RWPEAEVQSL ITLRAALEHK FRIAGNSKGP VWEEISLGMY DMGYNRSARK  300
CKEKWENINK YFKRSMGTDK KRSANAKTCP YFHELELLHK SGLVSSEDGF KFTSNQNESK  360
IEKQDNREKG VTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	KRKRKRR
2	112	117	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	3e-44	Trihelix family protein