PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001510.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SRS

Protein Properties

Length: 428aa MW: 43955.7 Da PI: 8.0499

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001510.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.1	2.3e-68	209	370	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsa 85 + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aa a +++ +++++k++r l ++q++ Pav_sc0001510.1_g020.1.mk 209 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LIGASQTT 291 5789***********************************************99999999998884445555555.5699999 PP DUF702 86 lsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+t++s+++++++ +tss lP++v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ Pav_sc0001510.1_g020.1.mk 292 TSHTSTSNTTPPRSYDTSSshqdagfkesLPSQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVES 370 ***************999******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MWPSSGPPSR PLSYSHLPPE MAGMVGLRDV FVVAPAAAYH HNNHHHLHHH HHDPNLLSPS 60 SDPHHNINAS TNPATALGVG VGVPVIPLLT ATPCLAPPNI SNVDDDEDNN AHTPTGMSMG 120 MGMGMGMGMG MGMGMGMMSS GQHRNNRSAG GGGGGGIQLW QQTQPHFFKK TPHDLAATSL 180 GGTHLVQGGG GGGVGNNVMN SSSAAASGAS TMTCQDCGNQ AKKDCTHRRC RTCCKSRGFD 240 CATHVKSTWV PAARRRERQL MSGAAGGGAG SNSGSTSSAK KPRLIGASQT TTSHTSTSNT 300 TPPRSYDTSS SHQDAGFKES LPSQVRAPAV FKCVRVTAVE DGDDEYAYQA VVKIGGHVFK 360 GFLYDQGVES REGFPNISEL HLGGGGGTSG GGNGGRNGAS SPILDTSDVY GASSGGLLGG 420 SNFGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MWPSSGPPSR PLSYSHLPPE MAGMVGLRDV FVVAPAAAYH HNNHHHLHHH HHDPNLLSPS  60
SDPHHNINAS TNPATALGVG VGVPVIPLLT ATPCLAPPNI SNVDDDEDNN AHTPTGMSMG  120
MGMGMGMGMG MGMGMGMMSS GQHRNNRSAG GGGGGGIQLW QQTQPHFFKK TPHDLAATSL  180
GGTHLVQGGG GGGVGNNVMN SSSAAASGAS TMTCQDCGNQ AKKDCTHRRC RTCCKSRGFD  240
CATHVKSTWV PAARRRERQL MSGAAGGGAG SNSGSTSSAK KPRLIGASQT TTSHTSTSNT  300
TPPRSYDTSS SHQDAGFKES LPSQVRAPAV FKCVRVTAVE DGDDEYAYQA VVKIGGHVFK  360
GFLYDQGVES REGFPNISEL HLGGGGGTSG GGNGGRNGAS SPILDTSDVY GASSGGLLGG  420
SNFGNPIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-74	SRS family protein