PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001502.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 320aa MW: 36163 Da PI: 6.3577

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001502.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	181	206	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Pav_sc0001502.1_g140.1.mk 181 YQPDICKDYKETGYCGYGDSCKFMHD 206 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MADSGGNAEP GEVCNFFRKP LKKQNIRKRR VDEDEEDDDS KSGGTSLPSQ RKASKLDGKL 60 YFSSGPAKSS TPDSSAIFEF KSSKEIQVEH DSRATATLET ETDFSRDARA VRERVLKQSE 120 EALKGKSKGT GNDKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD 180 YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKIRKRN LALGEDDVEQ 240 TEEDDEDDED DEDGSLPFAC FICRQPFVDP VVTKCNHYFC EHCALKHHSK NKKCFVCEKP 300 TLGIFNTAHE IRKRMAAEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-158	C3H family protein